Halomonas chromatireducens: LOKO_02385
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Entry
LOKO_02385 CDS
T04292
Name
(GenBank) bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LOKO_02385
09124 Replication and repair
03420 Nucleotide excision repair
LOKO_02385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hco03021
]
LOKO_02385
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_02385
Enzymes [BR:
hco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LOKO_02385
Transcription machinery [BR:
hco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LOKO_02385
DNA repair and recombination proteins [BR:
hco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LOKO_02385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Motif
Other DBs
NCBI-ProteinID:
AMD01445
UniProt:
A0A0X8HF67
LinkDB
All DBs
Position
2524007..2526319
Genome browser
AA seq
770 aa
AA seq
DB search
MTAKDGQYRVAVRALCDFTAREGDLDHRFTPSPSAREGIAGHVLVAGRRGTGYEAELPLS
GSYRGLVVSGRADGYDPRANRLEEVKTHRGDLARMAANQRALHWAQVRVYGALLCAERKL
EAVTLALVYLDIATGRETSLSEEASAAELAAFFEAQCRRFLAWAEQESRHRQARDDDLYR
LSFPHPAFRPGQRELAEGVYKAAATARCLLTQAPTGIGKTIGTLFPLLTAMPRQGLDRIA
FLTMKTPGRRLALDALARLGAAGSAEHGEERRPLRVLELVARSKACEHPDKTCHGEACPL
AAGFYDRLPAARQAAVTRGWLDREALREVALAHEVCPYYLGQELARWCDVTVGDVNHYFD
AGGLLHGLAQADGWRLALLVDEAHNLIERARAMYSAELDQRDFSRLHRSAPPALVRPLGR
VVRQWQALVREAGPAPEGEPGRPAYCVLEGLPDRLVGALQLLAAAITDYLGEHPTGSDPE
LQERLFEALAFCRLADSFGDHSLCDLTRHGKGHSVVGLRNLVPADFLAPRFAAARSCVLF
SATLSPAHYHRDLLGLPEASAWQSVSSPFTSDQLEVRIQGGISTRLRDRAASVEPIVAEL
AGQYRQRPGNYLAFFSSFAYLEAVMARLREAHAEIPAWAQTRGMQEADRDAFLARFRPGG
RGIGFAVLGGAFAEGIDLPGDRLIGAFIATLGLPPFDPFNEALKARLESRFGRGDDYAYR
IPGLIKVVQAAGRVIRGPEDRGTLVLIDDRFGHRHVRSLLPTWWRLGQCQ
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgaaggatgggcagtatcgcgtggcggtacgcgcgctgtgcgactttaccgcc
cgtgaaggcgatctcgaccatcgcttcaccccctcgcccagcgcccgggaaggtatcgcc
gggcatgtcctggtggcgggccggcgtggtaccggttatgaagccgaactgccgctgtcg
ggtagctaccggggcctggtggtcagcggtcgcgccgatggctacgacccccgggccaat
cgcctggaggaggtcaagacccatcgcggcgacctggcgcgcatggcggccaaccagcgc
gccctgcactgggctcaggtaagggtctacggggccctgctgtgcgccgagcgaaagctc
gaggcggtgacgctggcgctggtctatctcgatatcgctaccggccgcgagacctcgctg
agcgaggaggcgagtgcggcagagctggcggcgttcttcgaggcccagtgccggcgcttc
ctggcctgggccgagcaggagagccgtcatcgccaggcgcgggacgacgacttgtaccgg
ctcagcttcccccaccccgcgtttcggcccggccagcgggagctggccgagggggtctac
aaggcggccgccaccgcacgctgcctgctgacccaggcgcccaccggcatcggcaagacc
atcggcaccctctttccgctgctcacggccatgccgcgccagggcctcgaccgcatcgcc
ttcctgaccatgaagaccccgggacgccgcctggcgctggatgccctggcccggctggga
gccgccggcagcgcggaacatggcgaagagcgccgaccgctgcgggtgctggagctggtg
gcccgcagcaaggcctgcgagcatcccgacaagacgtgccatggcgaggcctgcccgctg
gcggcgggtttctacgatcgcctgccggcggcgcgccaggcggcggtaacccggggctgg
ctcgaccgcgaggcgctgcgcgaggtggcgctagcccatgaggtctgtccctactacctg
gggcaggagctggcccgctggtgcgatgtgacggtgggggacgtcaaccactacttcgat
gccggcggcctgctgcacggactggcccaggcagacggctggcgcttggcgctgctggtg
gatgaagcccacaacctcatcgaacgggcccgtgccatgtacagcgccgagctcgaccag
cgagacttcagccggctgcatcgctcggcgccgccggccctggtccgccccctggggcgg
gtggtgcggcaatggcaggcgctggttcgcgaggcggggccggcgccggagggggagccg
gggcgcccggcctactgtgtcctcgaggggcttcccgacaggctggtgggagcattgcag
ctgctggccgccgccatcaccgactatctgggcgagcacccgaccggctctgacccggaa
ctgcaggagcgtctgttcgaggcacttgccttctgccgcctggccgactccttcggcgac
cactcgctgtgcgacctgacgcgccatggcaaagggcactcggtcgtcgggctgcgcaac
ctggtgccggccgacttcctggccccgcgcttcgccgcggcccggagctgcgtgctcttc
tcggccacgctgagccctgcgcattaccatcgcgacctgctgggcctgccggaggcgagc
gcctggcagtcggtatcctcgcccttcaccagcgaccagctggaggtgcgcatccagggc
ggtatctcgacacggctacgggaccgggcggcctccgtcgagccgatcgtcgccgaactg
gcagggcagtatcggcaacgtccgggcaactacctggccttcttcagcagcttcgcctac
ctcgaggcggtaatggcacgcctgcgcgaggcccatgccgaaatacccgcctgggcccag
acccgcggcatgcaggaggccgaccgggatgccttcctggcgcgctttcggccgggtggc
cggggaatcggctttgcagtgctgggtggcgccttcgccgaaggcatcgaccttcccggg
gatcggctgatcggtgccttcatcgccaccctggggctgcccccgttcgaccccttcaac
gaggcgctcaaggcccggctggagagccgcttcggtcgtggcgacgactatgcctaccgt
atccccggcctgatcaaggtagtgcaggcggccggccgggtcatccgggggccggaggac
cgcggcacgctggtattgatcgacgaccgcttcggccatcgccacgttcgcagcctgctg
ccgacctggtggcggctcgggcagtgtcagtga
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