Helicobacter cinaedi PAGU611: HCN_0329
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Entry
HCN_0329 CDS
T02034
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCN_0329 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcp03019
]
HCN_0329 (pnp)
03016 Transfer RNA biogenesis [BR:
hcp03016
]
HCN_0329 (pnp)
Enzymes [BR:
hcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HCN_0329 (pnp)
Messenger RNA biogenesis [BR:
hcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HCN_0329 (pnp)
Transfer RNA biogenesis [BR:
hcp03016
]
Prokaryotic type
tRNA degradation factors
HCN_0329 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
Motif
Other DBs
NCBI-ProteinID:
BAM11640
UniProt:
A0A809N6G2
LinkDB
All DBs
Position
334532..336646
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AA seq
704 aa
AA seq
DB search
MQRIDIQNENLNESYTFNYMAKAANGSVLYQNGGSVLLASVCAEENNKYDDDFLPLSVQY
IEKAYASNKFPPGFVKREGKPSEFEILTSRLIDRTLRPLFPKGYRHITSIVIWVLSYDGK
SDLQLNALNAASAALYVSNLPLESLKDNAVCGVRIGRKNGAFVLNPTMEQMSESELDLFV
SGRGDELLMIEMKSIRSEKGANELSERDMILALESAKSYIDRATQSYHKYFAPYKKQSLA
IDLSQDSLNTDLLEKIAKNYHSQILEAITFLAKSESQMQLHSIIKQAMRECGIEEEKIAT
EHIKAYKKKLVREMIIESAIRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQALVSA
TLGSENDAQSYEMLGSKNALKRRFLFHYNFPGFSVGEASMIGSVGRRELGHGNLARRALE
SSLTSQDRTIRLVSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGLVTQGEKY
AILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGISKEILEESLLQAKEAREQILG
IMEEARAKIVLNHSILPKSESFKIAPHKIVEVIGQGGRVIKDIIERFEVSIDLERESGIV
NVSASNEDNLAKAKAFILEIVSGAKSDRVDWESYNVGERFVGKIKKIADFGVFVELPRGG
DGLLHISKIIKDKNESIHSVLQGKSELECEILSRNKGKVELGLV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcattgatatacaaaatgagaatctaaatgagagttatacttttaactatatg
gcaaaggcagcaaatggcagtgtgctgtatcaaaacggcggaagtgtgctactagcaagt
gtgtgtgcggaagagaataacaaatatgatgatgactttttgcccttaagtgtgcaatac
attgaaaaagcctatgcgagtaataaattcccccccggttttgtgaagcgagagggcaaa
cctagtgaatttgagattctcacttctaggctcattgataggacattgcgtccgcttttt
cccaaaggctataggcatattacttcaattgttatttgggtgctaagctatgatggcaag
agtgatttgcagctcaatgcacttaatgccgcatcggcagctttatatgtctcaaacctg
cctttagagagtttaaaagacaatgcggtgtgtggggtaagaatcgggcgtaaaaatgga
gcgtttgtattaaatcccacaatggagcagatgagtgaaagtgagcttgatttgtttgtg
tccggcaggggtgatgagctattaatgattgaaatgaaaagtattaggagtgaaaaaggg
gcaaatgaacttagtgaaagggatatgatacttgctttagaatctgctaaaagttatata
gacagggcgacacagagctatcacaaatattttgccccttataaaaagcaaagccttgcg
attgatttaagtcaagattcacttaacactgatttattagaaaaaattgctaaaaactac
catagccaaattttagaagccatcacatttttagctaaatcagaatctcaaatgcagctt
cattccattatcaaacaggcaatgcgtgagtgtggcattgaagaagagaaaatcgccaca
gagcatattaaggcgtataagaaaaagcttgtgcgtgagatgattatagaatctgctatt
agggctgatggcaggggcttaaaggatattcgccctatcagtatagagacaaatattctg
ccctttgctcacggcagtgtgcttttcacacgtgggcaaactcaagcccttgtgagtgcg
acacttggcagtgagaatgacgcacaaagctatgagatgttaggtagtaagaatgcgtta
aaacggcgatttttattccattataatttccccggattcagcgttggcgaagcaagtatg
ataggcagtgtagggcgtagagagctaggacacggcaatcttgctagacgcgctttagaa
tctagccttacttcgcaggataggacaatccgcttagtgtcagagattttagaatctaat
ggctcaagctcaatggcgagtgtgtgcggcggatctttggcattatgtgcgtgtggggtt
caggtagattctcttatagcgggggtggctatggggctagtaacacagggggagaaatac
gctatactcacagatattagtggtttagaagatcacgatggtgatatggattttaaggtt
gctggtggatataagggcataagtgcaatgcaaatggatattaagcttggtggcatttca
aaagagattttagaagaatctttactgcaagcaaaggaagcaagggagcagattctaggc
attatggaggaagctagggcaaagattgtgctaaatcattctatcttgccaaagagtgaa
agttttaagattgccccacataagattgttgaagtgatcgggcaaggtgggcgtgtgata
aaggatattattgagcgatttgaagtgagtattgatttggagcgtgaaagtggaatagtg
aatgtgagtgcaagtaatgaagataatcttgctaaagccaaggcttttatcctagagatt
gtaagtggagctaaaagtgatagggtagattgggagagttataatgtgggtgagcgattt
gttgggaagataaagaaaattgcggattttggggtatttgtggagctgccgcgtggtggt
gatgggctattgcatatcagcaaaattattaaagataagaatgaaagcattcatagtgtg
ttgcaaggcaaaagtgagttagagtgcgagattctctcccgcaataagggcaaggtggag
ttaggcttagtttaa
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