Hippocampus comes (tiger tail seahorse): 109507778
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Entry
109507778 CDS
T04969
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109507778 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcq03400
]
109507778 (lig4)
Enzymes [BR:
hcq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109507778 (lig4)
DNA repair and recombination proteins [BR:
hcq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109507778 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DUF5803
Motif
Other DBs
NCBI-GeneID:
109507778
NCBI-ProteinID:
XP_019712986
UniProt:
A0A3Q2YX25
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MEGTSKSATGDQPSIVAAQVPFLHLCNTLEKIQKLKLRPEKSKTLGDFIVSWRTFHAALH
KDEPKTTDSFYPAMRLIVPSFERERMAYGIKENMLAKLYIDVLCLPKNGPEANKLLNYRT
PTASQGESGDFAGMAYFVLKKRCTGQGKLSIKEVNDFLDSVALNNASKKKDLVKTSLLHL
ITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVTTDLDKVCRQLHDPSVS
LSEVSIGLFSAFKPMLAAVANIGGIEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRN
AFDYTQQFGGSPREGSLTPHIHKVFQSHVVNCILDGEMMAYNPTAKTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNSQKLGKETLKKRYEILQTVFTPVTGRIHLVLKTEARTTRDV
VNSLNDAIDHREEGIMVKDPLSVYKPDKRGEGWLKIKPEYVGGLMDELDVLIVGGYWGKG
RRAGMMSHFLCAVAEAPTVGDKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PANILCATEKPEVYIEPCNSVILQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCI
TLAELEQFRGKASGKLASRHLCIDAADEPRRKRPKLPARSKKALSDLYKPQDLSGVAKET
DIFEDVEFCILNGTADHPKAELEKAVARCGGIVVQNPGPETYCVIAGLENMRVKNLILSD
RHDVVRAPWLVECLEQKRVVAWQPRHMIHMSPSTKEHFAKAYDGYGDSYFLDTDERQLRE
VFGRAGGVDGPAAVDVGRVEERYGWGDLPTSMFRPFRVYMDDYADVNDPASVISASGLDI
RALEFRYHGGTVVEKLEEGVSHVVVMAESRLERLRGLRRGFRKKFKIVRDSWVTDSIQAG
HLMNDDNYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacgtcgaaaagcgccacgggcgatcaaccgtcgatcgttgccgctcaagtc
cccttccttcacctgtgtaacactttggaaaaaatccagaaattgaaactccgcccagaa
aagtccaagaccctcggggattttattgtgtcatggagaacgttccacgctgccctgcat
aaggacgagcccaaaacaaccgactctttctacccggcgatgcgtctcattgttccctca
ttcgagcgagagcgaatggcttacggcatcaaagaaaacatgctcgctaaactttacatc
gatgtattatgcctcccgaaaaacggtcccgaagccaacaagctattgaactaccgcaca
ccgaccgcgtctcaaggagagtccggagactttgccggcatggcgtattttgtgctcaag
aagcgctgcaccggccagggaaagctcagcatcaaggaagtcaacgactttcttgactcg
gtcgcgctcaacaatgcgagcaagaagaaagaccttgtgaaaaccagcctgctgcacctc
atcacgcagagctccgcccttgagcaaaaatggctcatcagaatgatcctgaaggacatg
aagctcggcgtgagcaaggaaacggtccttcaagtcttccacccggatgccgccgagctc
tacaacgtgaccacggacttggacaaagtgtgccggcagctccacgacccctcggtgtct
ttgagcgaagtttccatcggccttttctccgccttcaaacccatgttggctgccgtggcg
aacatcggcggcattgagaagcagatgggaaacagccctttttacattgaaaccaagttg
gatggggagcggatacaactccataaagacggcgacgtgtacaagtacttcagccggaac
gcctttgactacacgcagcagttcggcggctcgccccgcgagggttcgctgacgccgcac
atccacaaagtcttccaaagccacgtcgtcaattgcatcctcgacggggagatgatggct
tacaaccccaccgcaaagactttcatgcagaaagggagcaaattcgacatcaagagactc
gtggatgattccgagttgcagacttgcttctgcgtctttgacgtgctcttagtcaactcc
cagaagctcggcaaggaaacgctgaagaagcgctacgagatcctgcagacggttttcact
ccggtgaccggccgcatccatttggtgctgaaaacggaggcccggaccacgcgggacgtg
gtgaattccctcaacgacgccattgaccaccgagaagagggcatcatggtgaaggatcct
ctctccgtctacaaaccggacaagcgaggcgagggctggctgaagatcaagccggaatac
gtgggcggcctgatggatgagctggacgttctgattgtcggcggctactgggggaaaggg
aggagggccggcatgatgtcccatttcctgtgcgccgttgcggaagctccgacggttggc
gacaaaccttcggttttccacacgctctgtcgcatcggctcgggctacaccatgaaggag
ctgtacgacctcggcctgaagctcgcaaagcactggaaagtctaccgtaaaaacgacccc
ccggccaacatcctgtgcgcgaccgagaagcccgaggtgtacatcgagccttgcaactcg
gtcatccttcaggtgaaggcggccgagatagtcggcagcgacatgtacaaaaccaactgc
accctgcgcttcccgaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatc
accctcgccgagctggagcagttccgcggcaaggcgtcgggcaaactggcctcgcgccac
ctttgcatcgacgccgccgacgagccgcggaggaaaagaccgaagctgcccgccagatcc
aagaaggcgctcagtgacctctacaagccgcaggatctctccggggtcgccaaggagacg
gacatctttgaggacgtggagttctgcatcctcaacgggaccgccgatcaccccaaggcc
gagttggagaaagccgtggccaggtgcggcggtatcgtcgttcagaacccggggccggaa
acgtattgcgtcatcgccggactggagaacatgcgtgtgaagaatctgattttgtccgac
cggcacgatgtggtgcgggccccctggctggtggagtgtctggagcagaagcgggtggtt
gcgtggcagccgcgccacatgatccacatgtcgccctccaccaaggaacacttcgccaag
gcctacgacggctacggcgacagctacttcctggacacggacgaacggcagctgagggaa
gtgttcgggcgcgcgggaggggtggacggcccggcggccgtcgacgtcggccgagtcgag
gagcgttacggctggggcgaccttcccaccagtatgttcagacctttcagggtttacatg
gacgactacgccgacgtcaacgaccccgccagcgtcatttccgcaagcggtttggatatc
agggccctggagtttcgttaccacggaggcacggtggtcgagaagttggaggaaggcgtg
tcgcacgtcgtcgtcatggccgaaagcagacttgagcgtttgaggggattgaggcgcggc
tttcgaaagaagttcaaaatcgtccgagactcctgggtgacggactcaatccaagcgggg
cacctgatgaacgacgacaactatttagtctga
DBGET
integrated database retrieval system
