Hippocampus comes (tiger tail seahorse): 109510635
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Entry
109510635 CDS
T04969
Symbol
npc1l1
Name
(RefSeq) Niemann-Pick C1-like protein 1 isoform X1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hcq02000
]
109510635 (npc1l1)
Transporters [BR:
hcq02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
109510635 (npc1l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
Folate_rec
RSN1_TM
DUF5531
Motif
Other DBs
NCBI-GeneID:
109510635
NCBI-ProteinID:
XP_019716665
LinkDB
All DBs
Position
Unknown
AA seq
1411 aa
AA seq
DB search
MATTPTDQLIKMRGHSNTSCHCSCMVMQILFHTVQVLSQAEHRAGYCAFYEECGRNPSLE
GALIPPIVPCRNYSRARELTGEHYRKLKEVCPMLDKGLGSTFACCSIKQLTSLEMSLTLS
KALLVRCPSCAENFAHLHCINTCSPNQSQTVKVTKVMNVTHLGKTREVVVEYQAYLATSF
ADGAFQSCQNVRIPATGGFAIATMCGRYGAKLCTPQRWYDFQGDTSNGLAPLDIDFRLIK
PGEVEGVPEGVIPYKGRALKCNETTPSGGQVCSCQDCKESCPVLPPPPLPPGPFRLLGTD
GFLVISIILFCLLIFSFLFFLLVSCLVKSQKKQDQEKKKKKGKDQNCNDVSQRVIHPAEV
SCADRNSMAAQAFLSSVFQKWGTFMATYPLMVLLVSAVVVLGFGTGLMFIELTTDPVELW
SAPNSRARQEKDFHDKHFGPFFRTNQLILTAPGRKGHIYDSLLFGTQNFSGLVSKDLVIE
MLLLQKKIQNIEFWSEDLNRTASLKDVCFAPLNPNNSALTDCAVNSLPQYFQNSLDNINA
KVNMTELGVTKEVDWRDHLIYCLNSPLSFKDITDLGLSCMADYGAPVFPFLAVGGYRGDE
YTNAEAFILTFSLNNYPRTNVKYNVALQWEKEFLKIVQDYQSNPTTNFTFAYMAERSLED
EINRTTAEDIPIFMISYAVIFVYIAVALGEYSSWRRILVDSKFLVGLGGILVVACSVLAS
MGFYSWIGIPSSLVILQVVPFLVLAVGADNIFIFVLEYQRDVRKPGEEREQQIGRVLGNV
APSMLLCSLSESVCFFLGALSTMPAVKTFALYAALAVLMDFVLQMTAFVALLSLDARRQD
NNRCELLCCVTVATQKSNQPNEGFLLPLMRKYYAPVLLNRYMRFIVMLVFLFMFSASLYL
MFNVTVGLDQELAMPKGSYMLDYFQYLYKYLEVGVPVYFVTKRGFNFTTEEGMNAVCSSV
GCDQFSMIQKIQYAANHPEQSYIGISANSWVDDFIDWLNPGSRCCRLYSFGPNAGNFCPA
DKSSFLCGRKCMAKPSNGVLRPTEEQFNRFLPNFLGNRPDLQCPKGGLGAYDTAVVKDDS
GEIIGETFQKSDSSPQRFPKEIHRTRDAAFLPMRAASRFMAYHTPLTNSQEFTAALLRAR
ELAYDITQGMLKINGTSPDFEVFPYTVTNVFYEQYLTIVPEGLFNISLCLLPTFVVCCLL
LGLDLRSGLLNLITIIMITVDTVGFMTLWGIHYNAVALINLVTAVGISVEFVSHMTRSFA
LSIKPTHVERAKEATANMGSAVFAGVAMTNLPGILVLAFAKAQLIQIFFFRLNLVITLLG
MAHGLIFLPVVLSYFGPGVNKAMLVQMQQAEAKTRQELELTNNMRQFYDNMSYEDDEAKE
EPHANATKATVYAEGPPPSVKHKQEVKIDHF
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggccacgacgccaacggatcaattaatcaaaatgaggggacattcaaacaccagctgt
cattgttcctgtatggtcatgcagatcctgtttcatactgtgcaggtgctgtcacaggct
gagcatcgagccggctactgtgctttctatgaagaatgtggcagaaacccttcactagaa
ggcgccctcatccctcccattgtcccgtgccgaaattatagccgagcccgggaactgaca
ggagaacactaccgtaaactcaaagaggtgtgtcccatgctggacaagggacttggcagc
acctttgcctgttgctccattaagcagctgacatccttggaaatgagtttgactttgtcg
aaggccctgctggtgcgctgcccttcttgtgccgaaaactttgcccacctgcactgcatc
aacacctgcagcccaaaccagagccagacagtcaaagtcacaaaggtcatgaatgttacc
cacctgggaaagaccagagaggtcgtggtggagtaccaggcatatctcgccaccagcttt
gcagacggcgcctttcagtcgtgtcaaaatgtccggatccccgccacgggaggttttgcc
atcgccaccatgtgcggccgctacggtgccaagctgtgcaccccccagcgctggtacgac
ttccagggagatacgagcaacggtctggctccactggacattgatttcagactcataaaa
cccggagaagtagagggagtacctgagggggtgattccctacaaggggcgagctttgaag
tgcaatgagaccacgccttccggcggtcaggtgtgctcgtgtcaggactgcaaagaatca
tgccctgtccttccacctcccccgctgccaccaggacccttcagacttttgggcacagat
ggcttccttgtcatttctatcatcttattctgtctcctgatcttttccttcctcttcttc
ctcttggtctcttgtttggtcaagtcgcagaagaagcaggatcaagagaaaaagaagaag
aaaggcaaagatcagaactgtaacgatgtcagtcagcgggtcattcatccagcagaggtg
tcgtgcgccgacaggaacagcatggctgctcaggccttccttagctccgtgtttcagaaa
tggggaacattcatggctacctatcccctcatggtgctgctggtgtcggctgtggttgtc
ctggggttcggcaccggcctcatgttcattgagctcaccactgacccagtggagctctgg
tcagctcctaacagccgagctcgtcaggagaaggattttcatgacaaacactttggccct
ttcttcaggaccaaccagctgattttgacagcaccaggcaggaaaggtcacatttatgac
tctttgctctttggaacgcagaactttagcggccttgtttccaaagacctcgtcattgag
atgctgcttctccagaaaaaaatacagaacattgagttctggtcagaggacctaaatcgc
acagcaagtctgaaggatgtgtgctttgcgcccctgaatcccaacaactccgccctgacc
gactgtgcggtcaacagtctgccgcaatacttccaaaacagcctggacaacatcaatgcc
aaggtgaacatgactgaattgggggtgaccaaagaggtggattggcgagatcacctcatc
tactgcctcaattcgcctctgtcgttcaaagacatcactgatttaggactgagctgcatg
gctgactatggcgctccggtctttcccttcctggctgtcggcggctaccggggtgacgag
tacaccaatgcggaggctttcattttgaccttctccctcaacaactatccacgaaccaac
gtcaagtacaacgtggccttgcaatgggagaaagagtttctgaaaattgtccaagactac
cagagcaaccccaccaccaactttacgtttgcatacatggcagagaggtcactggaggat
gagatcaatcggactacagcagaggacattcccatcttcatgatcagttatgctgtaatc
tttgtttacatcgctgtcgctctgggggagtattcttcttggagacgcatactggtggac
tcaaagtttctagtgggtctcggtgggattttggtggttgcatgctcggtgctggcatcc
atgggcttctactcttggatcggcattccctcctcgttggtcatcctgcaagtggtaccg
ttccttgtgcttgctgttggagctgacaacatcttcatttttgttctggagtaccagcga
gatgtgcggaagcccggagaggaaagagagcagcagattggccgcgtgcttggaaacgtt
gctcccagcatgctcctgtgcagtctctctgagtcagtctgcttctttttaggggccctg
tcgaccatgcccgcagtgaagaccttcgctttgtacgccgctttggctgtgcttatggac
tttgttctccagatgacagcgtttgtggcactgctgtcgctggatgcccgccgccaagac
aacaaccgctgtgagctgctctgctgcgtcaccgtagccacccagaaatccaaccagccc
aatgagggcttcctgttgcccctcatgaggaagtactacgcccccgtactgctgaaccgt
tacatgagattcatcgtgatgttggtgttcctcttcatgttcagtgcttctctgtacctg
atgttcaacgtaacagtgggtctggatcaggagctggctatgcccaagggctcatatatg
cttgattatttccagtatttatacaaatatttggaagtcggagtcccggtttattttgta
acaaaacgaggcttcaattttaccacagaagagggcatgaacgccgtgtgttccagtgtg
ggctgcgaccagttttcaatgatccagaagattcaatatgccgccaatcaccccgaacag
tcatacattggcatctctgccaactcgtgggtagatgatttcatcgactggttgaacccg
ggatccagatgttgtcgactttatagctttggtccaaatgctggaaacttctgtcctgca
gacaaatcttctttcctctgtggacgaaagtgtatggcgaagccttcaaatggcgtcctg
cggcccaccgaggaacagttcaatcgctttcttcctaacttcttgggtaataggcctgac
ctgcagtgccccaaaggaggactgggagcctatgatacggctgtggtgaaagacgacagc
ggagaaattattggtgagacatttcaaaaatcagatagcagtccacaacgttttcccaaa
gagattcaccgcacacgtgacgcggcttttctccctatgcgcgcagcctctcgcttcatg
gcttaccacacacctctgaccaactctcaggagttcactgcggcactactgagggccaga
gagctggcctatgacatcactcagggcatgctcaagataaatggaacctctccagacttt
gaagtcttcccttacacggtgaccaacgttttctacgagcagtacctgacgatcgtacca
gagggcctcttcaacatctcactgtgtctgctgccaacatttgttgtgtgctgtctgctt
ctgggcctggacctgcgctccggtctactcaacctcatcaccatcattatgatcactgtg
gacactgttgggttcatgacactctggggaatccattacaatgccgtggccctcattaac
ctggttacagcagtgggcatttctgtggaatttgtgtcccacatgacgagatcgtttgct
ctcagcataaagcccacacatgtggagcgagccaaagaggccaccgccaacatgggcagt
gcagtgttcgctggtgttgcgatgaccaacctgcccggcatccttgttttggcctttgcc
aaagcgcagcttatccagatcttcttcttccgcctcaatctggtcatcacacttctgggg
atggctcatggactcatcttcctccctgtggtgcttagttactttgggcccggtgtgaat
aaagccatgctggtgcagatgcagcaagcagaggcaaagacccgccaggaattggagctg
acaaacaacatgagacaattctatgataacatgagctatgaagacgatgaggcaaaggag
gagccacacgccaatgctacaaaggctactgtgtacgccgaaggcccaccaccgagtgtg
aaacacaaacaggaagtgaaaattgaccatttttga
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