KEGG   Hippocampus comes (tiger tail seahorse): 109517884Help
Entry
109517884         CDS       T04969                                 

Gene name
lig3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03410  Base excision repair
Module
hcq_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109517884 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hcq03400]
    109517884 (lig3)
Enzymes [BR:hcq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109517884 (lig3)
DNA repair and recombination proteins [BR:hcq03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     109517884 (lig3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 109517884
NCBI-ProteinID: XP_019728916
LinkDB All DBs
Position
Unknown
AA seq 993 aa AA seqDB search
MQRCFILLAKKTLCLRPLAPLAPRLRVAFWRLLAPHPESRHRSLLERHGGLRLSLPAPDA
MAEQRFLVEYAKRGTAGCKKCKDKIAKGMARIGKVVPNPFSESAGEMKEWYHIKCMFEKL
ERARATTKKIEDITDLEGWEELQDEDKELINRHVSELMSKVKSSPQKKTPAKSAASAKLT
SPAADAAASLNAPRKFSGFTAAKAGASPYTSSPLSSPSPAKQGSALAAQLCDPHHKDCLF
REFRKLCATVAENNSYNSKTQIIEKFLRKGTGGDKFHGDLYLTVKLLLPGVVKSVYNLND
KQIVKLFSRVFRCSQDDMVRDLEKGDVSETVRMFFEDSKAFPPSAKSLLTIQEVDASLTR
LAQLTKEDEQQAELEDVAKKCTGNDLKGIIRLIKHDLKMNAGAKHVLDAVDPNAYDAFKA
SRNLADVIERVLRNQQEASDGSGPRKLLTVEASLMTPVQPMLAEACKSIEYAMKKCPNGM
YSEIKYDGERVQVHKSGDSFSYFSRSLKPVLPHKVAHFKDYIPRAFPGGHSMILDAEVLL
IDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNGNSLMERPLSERRKFLHDNMVE
VPNRILFSEMKHVTRARDLADMITRVIREGLEGLVLKDVKGSYEPGKRHWLKVKKDYLNE
GAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCTVTKCSGGYDDAMLARLQK
ELDVVKISKDPSKIPGWLKIVKNYYPDFLIRSPEQAPVWEITGAEFSKSEMHTADGISIR
FPRMTRVRDDKDWKSATNLPQLKELYRISKENCDFQVTAGPSGQDKAESAGDSGGSSPAS
ESTLPKKASNSTPAKRKAVKSEPSSPAIKAPAPKKVRKSAESVQSNGHAGTAKVTATPPP
TPRMLESNDDKTLLDIFSGIKLFLPSGVDDFAKLRRYFVAYDGDLVADYDAASATHTLAD
NQEGDGEGASRARRVTPGWIWECIRKRRVVAPC
NT seq 2982 nt NT seq  +upstreamnt  +downstreamnt
atgcagaggtgcttcattttgctagccaagaagaccctctgccttcgccccctcgcaccc
ctcgcccctcggctccgggtggccttttggcggctcctcgccccgcaccccgagtcccgt
caccgcagccttctcgagcgtcacggaggcctccggctctccttgcccgcgcccgacgcc
atggcggagcagcgtttcctggtggagtacgccaagcgcggaacagccggctgcaagaag
tgcaaggacaaaatcgccaagggcatggcgcgcatcggcaaggtggtgcccaaccccttc
agcgagtcggccggcgaaatgaaggagtggtaccacatcaagtgcatgtttgaaaagctg
gaacgcgcccgtgccacgaccaagaagatcgaggacatcaccgacctggagggctgggag
gagctgcaggacgaggacaaagagctcatcaaccgacacgtctctgagttgatgtccaaa
gtaaagtcgagtccgcagaagaagaccccggccaagtcggccgcttcggccaaactgacg
tcacctgctgccgacgccgcagcctcgctcaacgcgccgcgcaagttctcagggttcacc
gcggccaaggcgggcgcctccccgtacacgtcctcacccctgtcgtcgccgtcgcccgcc
aagcagggcagcgctctagccgcgcagctgtgcgacccgcaccacaaggactgcctgttc
cgcgagttccgcaagctgtgcgccacggtggccgagaacaacagctacaacagcaagacg
cagatcattgagaagttcctgcgcaagggcaccggcggagataaattccacggtgacttg
tacctgacggtgaagctgctgctgcccggcgtggtgaagagcgtgtacaacctcaacgac
aagcagatcgtcaaactcttcagccgcgtgttccgctgcagccaggatgacatggtgcga
gatctggagaagggcgacgtgtcggagacggttcgcatgttcttcgaggacagcaaagct
ttcccgccgtcggccaagagcctgttgaccatccaggaggtggacgcctcgctcacccgc
ctggcacagctcaccaaggaggacgagcagcaggcggagctggaggacgtcgccaaaaag
tgcaccggcaacgacctgaaaggcatcatccgcctcatcaagcacgacctgaagatgaac
gccggagccaagcacgtactggacgcggtggaccccaacgcctacgacgccttcaaggcc
tcccgcaacttggccgacgtgatcgagcgcgtgctgaggaaccagcaggaggcctcggac
ggctcggggccccgcaagctgttgaccgtggaggcctcgctcatgacgcccgttcagccc
atgctggcggaggcgtgcaaatccatcgagtacgccatgaagaagtgccccaacggcatg
tactcggagatcaagtacgacggtgaacgcgtgcaggtgcacaagagcggcgacagcttc
agctacttcagtcgcagcctcaaacccgtcttgccgcacaaagtggcacacttcaaggac
tacatcccgcgggcgttccccggcggccacagtatgattttggacgccgaggtgctgctc
atcgacaccaacaccagcaagccgctccccttcggcacgctgggcgtgcacaagaaagct
gcttttcaagacgccaacgtctgcctctttgtttttgactgcatatacttcaatggcaac
agtctcatggaaaggccgctgagcgagcgcaggaagttcctgcatgacaacatggtggag
gtgcccaaccggatcctcttttcggaaatgaagcacgtcacgcgtgcgagagacctggcc
gacatgatcactcgagtcatcagagaaggcttggaaggcctggtcctcaaagacgtgaag
ggctcgtacgagccaggcaagcgtcactggctgaaggtgaagaaggactacctgaacgag
ggcgccatggccgacacggccgacctggtggtgctgggcgctttctacgggaaaggctcc
aacggcggcatcatgtccagcttcctgatgggctgctatgacccggactccaagaagtgg
tgcactgtcaccaagtgctcgggcggctacgatgacgccatgttggctcgtctccagaaa
gagctggacgtcgtcaaaatcagcaaggaccccagcaagatccccggctggctgaaaatc
gtcaagaactactacccggatttcctcatccgcagtcccgagcaagcgcccgtgtgggag
atcacgggcgccgagttttccaagtcggagatgcacacggccgacggcatctccatccgc
ttcccccgcatgacgcgcgtccgcgacgacaaggactggaagagcgccaccaacctgccg
cagctcaaagagctgtatcgcatctccaaggagaactgcgatttccaagtgacggcggga
ccttctggccaagacaaggccgagtctgcgggagacagcggcggcagttcgccggcgtcc
gagagcaccctgcccaagaaagcgagtaacagcaccccggccaaacgcaaggcggtgaaa
tccgagccgagctctcccgccatcaaagctcccgcccccaaaaaggtgaggaagagtgcg
gaaagtgtgcagagcaacggacacgcgggaacggcgaaggtgacggcaacgccgcctcct
accccgcggatgctcgagtccaacgacgacaagacccttctggacatcttcagcggcatc
aagctcttcctgccttccggcgtggatgattttgccaagctgcggcgttactttgtggct
tacgacggcgacctggtggcggactacgacgccgcctcagccacccacactctggccgac
aatcaggagggcgatggagagggcgccagccgggcccggcgggtgacgcccggctggatc
tgggagtgcatccgcaagaggcgtgtggtcgctccctgctag

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