Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0532
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Entry
HDEF_0532 CDS
T00911
Symbol
rnc
Name
(GenBank) RNase III, ds RNA
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hde03019
]
HDEF_0532 (rnc)
03009 Ribosome biogenesis [BR:
hde03009
]
HDEF_0532 (rnc)
03036 Chromosome and associated proteins [BR:
hde03036
]
HDEF_0532 (rnc)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
HDEF_0532 (rnc)
Messenger RNA biogenesis [BR:
hde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HDEF_0532 (rnc)
Ribosome biogenesis [BR:
hde03009
]
Eukaryotic type
90S particles
RNase
HDEF_0532 (rnc)
Prokaryotic type
rRNA processing factors
HDEF_0532 (rnc)
Chromosome and associated proteins [BR:
hde03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
HDEF_0532 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
LysM
Motif
Other DBs
NCBI-ProteinID:
ACQ67286
UniProt:
C4K3Z3
LinkDB
All DBs
Position
529835..530515
Genome browser
AA seq
226 aa
AA seq
DB search
MNSININSLELKLRYSFKERSLLLQALTHRSLHTQHNERLEFLGDSILSFVIANQLYHRF
PEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQLGQGELKTGGAQRESILADSIEAII
GAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKDPKTRLQEYMQSHQLPLPFYLLAQVC
GEAHDQEFTIHCQVSGLEELVVGKGSNRRKAEQEAAEKTLKKLEFE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaattctattaatatcaacagtctagaacttaaattgagatattcttttaaagaaaga
tcgcttcttctacaagctctgactcatcgtagtttacacacgcaacacaatgaacgttta
gaatttttaggggattctatattaagctttgtgattgcaaatcagttatatcatcgcttt
cctgaaattaatgaagggaatatgagccgcatgagggccactttagtcagaggggatact
ttaactgaaatcgctcgtgagtttgatattggagcctacttacaactcgggcaaggcgaa
ctcaaaacgggtggggctcaacgtgaatctattttagcagatagcatcgaagccattatt
ggcgctatttttttagacagtgatattcaaacagtagaaaaaaccattttgcgttggtac
cacaaacgtttagaacagattaatccaacccatcatcaaaaagatccaaaaacacgtttg
caggaatatatgcaaagccaccaactgccgttgcctttttatctgctcgctcaggtttgt
ggtgaagcacatgatcaagagtttactattcattgccaagtcagtggattagaggaactg
gttgtaggaaagggctctaatcgccgcaaagctgaacaggaagcagcagaaaaaacgttg
aaaaagctggaatttgaatga
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