Hartmannibacter diazotrophicus: HDIA_2887
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Entry
HDIA_2887 CDS
T05217
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03420
Nucleotide excision repair
hdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDIA_2887 (uvrD)
03430 Mismatch repair
HDIA_2887 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdi03400
]
HDIA_2887 (uvrD)
Enzymes [BR:
hdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDIA_2887 (uvrD)
DNA repair and recombination proteins [BR:
hdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDIA_2887 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HDIA_2887 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DUF3553
DUF3638
Motif
Other DBs
NCBI-ProteinID:
SON56428
UniProt:
A0A2C9D8G9
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All DBs
Position
1:3094807..3097212
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AA seq
801 aa
AA seq
DB search
MQNHPTSSHGQVPQPDETAPRPGSIAARALGAARPVAYLDNLNPEQKDAILTLDGPLLVL
AGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKERIGKLVGSAVEGMPWL
GTFHTIGVKLLRRHAEMVGLRSDFTILDTDDQIRLMKQLIQAEGIDEKRWPARQLASLID
GWKNKGLGPKDIPEGDARYFGNGRGRELYTAYQDRLKVLNAVDFGDLLLEALRLLREHPD
VLADYHRRFRYILVDEYQDTNVVQYMWLRLLAQGSKNICCVGDDDQSIYGWRGAEVDNIL
RFEKDFPGAKVVRLERNYRSTAHILGAASHLIAHNEARLGKTLFTDAVDPDADKVRVAAA
WDSEEEARAIGDEIERLQRHGSNLNEIAILVRASFQMREFEDRFVTLGVPYRVIGGPRFY
ERQEIRDALAYFRIVSQPADDLAFERIVNTPRRGIGGATVQMLHAYGRANSVPLTDAVHN
LLQTEELRGKARTSLTGLMASIERWRNQLDALSHTELAKMILDESGYTEMWQNDRSAEAP
GRLENLKELIRSMQDFESMTGFLEHISLVMDRDADDSAEAVSIMTLHSAKGLEFETVFLP
GWEEGLFPHQRALDESGRAGLEEERRLAYVGVTRAKKRANIWFASNRRIHGSWQSSIPSR
FLDELPEAHVEVVEQGSSYGGYSRSNYGAYGASRFDSQATFGGSSYNTPGWKRAAKTQAF
GDGSWSQGTGSGRTPSGVKMIEGELIARSVVGGEAKYDVGARVFHLKFGNGVVFSVDGNK
LTVDFDKAGRKKVVDSFVEKI
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatcacccgacttcctcgcacgggcaggtgccccagcccgacgagacggccccg
cgccccggttccatcgccgcgcgcgcccttggcgcggctcgcccggtcgcctatctcgac
aacctcaatccggagcagaaggacgcgatcctgacgctcgatggcccgcttctggtgctg
gccggcgccggcaccggcaagacccgcgtgctgacgacccgcatcgcccatatccttgcg
acgggccgcgcctatccctcgcagatccttgcggtgaccttcaccaacaaggccgcccgc
gagatgaaggagcgtatcggcaagctggtcggcagcgcagtcgaaggcatgccgtggctc
ggcaccttccacaccatcggcgtcaagctgctgcgacgccacgcggaaatggttggcctg
agatccgatttcaccatcctcgacaccgacgaccagatcaggctgatgaagcagctgatc
caggccgaaggcatcgacgagaagcgctggcccgcccgtcagcttgcctcgctgatcgat
ggctggaagaacaagggcctcgggccgaaggacattcccgagggcgacgcccgatatttc
ggcaacggccgcggacgcgagctttacaccgcctaccaggatcgactgaaggttctgaac
gccgtcgatttcggcgacctgctgctggaggcgctgcggctcctgcgcgagcatccggat
gtgctggccgactatcaccgccgcttccgctacatcctcgtcgacgagtatcaggacacc
aacgtcgtccagtatatgtggctgcggcttctggcgcagggatcgaagaacatctgctgc
gtcggcgacgacgaccagtcgatctacggctggcgcggcgcggaggtggacaacatcctg
cgtttcgagaaggattttccgggtgccaaggtggtccggctggagcgcaactaccgctcc
acggcccacatcctcggtgccgcctcgcacctgatcgcccacaacgaggcgcgcctcgga
aagacgctcttcaccgacgcggtcgatcccgacgccgacaaggtgcgtgtcgccgccgcc
tgggactccgaggaggaggcccgcgccatcggcgacgagatcgaacgcctgcagcgccac
ggatcgaatctcaacgagatcgccattctcgtgcgcgcctccttccagatgcgcgagttc
gaggaccgtttcgtcaccctcggcgtgccctatcgcgtcatcggcggcccgcgcttctac
gagcgccaggaaatccgcgatgcgctggcctatttccgcatcgtcagccagccggcggac
gatctcgccttcgagcgcatcgtcaacacgccgcggcgcggcatcggcggcgctacggtc
cagatgctgcacgcctatggccgcgccaacagcgttccgctgacggacgccgttcacaat
ctgctccagaccgaggaactgcgcggcaaggcccgcacaagcctgaccggtctcatggca
agcatcgagcgctggagaaaccagctcgacgccctctcccacaccgagcttgccaagatg
atcctcgacgagagcggctataccgaaatgtggcagaacgaccgctcggccgaggctccc
ggccggctggaaaacctgaaggagctgatccgctccatgcaggattttgaatcgatgacc
ggcttcctggagcacatttcgctggtgatggaccgcgacgccgacgacagcgccgaagcg
gtctccatcatgacactgcattcggccaagggtctcgaatttgagaccgtcttcctgccc
ggctgggaggaaggccttttcccgcaccagcgcgcactggacgaaagcgggcgggcgggc
ctcgaggaagagcgccgccttgcctatgtcggcgtcacgcgggcaaagaagcgcgcaaac
atctggttcgcctccaaccggcgcattcacggctcctggcaatcctcgatcccctcgcgc
ttcctcgatgagttgcccgaggcgcatgtcgaggtcgtggaacagggatcgagctacggc
ggctattcgcgcagcaactacggcgcctatggcgcgagccgcttcgacagccaggcgacc
ttcggcggctcctcctacaacacgccgggctggaaacgggcggccaagacgcaggccttc
ggcgacggaagctggtcgcagggcacaggctccggccgcacaccctccggcgtgaagatg
atcgagggcgaactgattgcccgctcggtcgtcggcggcgaggccaaatacgacgtcggt
gcgcgcgtcttccatctgaagttcggcaacggcgtcgtcttctcggtcgacggcaacaag
ctcaccgtcgatttcgacaaggccggccggaagaaggtcgtcgacagtttcgtggaaaaa
atctga
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