Hartmannibacter diazotrophicus: HDIA_4108
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Entry
HDIA_4108 CDS
T05217
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDIA_4108 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdi03019
]
HDIA_4108 (rhlE_2)
Enzymes [BR:
hdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HDIA_4108 (rhlE_2)
Messenger RNA biogenesis [BR:
hdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HDIA_4108 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
SON57649
UniProt:
A0A2C9DBU9
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All DBs
Position
1:4449755..4451209
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AA seq
484 aa
AA seq
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MNVIAPQFAALGLAEPLCRALEAAGYETPTPIQTASIPKVLTGRDLLGLAQTGTGKTAAF
CLPILQRLAQNPKKPVPRSMRALILAPTRELALQIAEGMAKYGKFAKLRHTTIFGGVGQG
PQVKAMSGGLDIVVATPGRLLDLVEQRLVRLDSVECLVLDEADRMFDMGFIRDVRRIVKL
TPKQGRQSLLFSATMPKEIEHLAMEVLSDPDRVAVTPEVVTVERIDQRLYHVPTAAKRGL
LSDLLADNDMRRVIVFTRTKHGANRVAEQLEKGGIAAAAIHGNKSQGARQRALSSFRDGS
LRVLVATDIAARGIDVPEISHVVNYDLPVEPESYVHRIGRTARAGAEGISISFCDASERG
ALKQIERLIKRPLPVVGKIDAKPSDEIGGTHERADSGPDRFSRQRQGQKKPNRSGNSPNG
NGRHKKPSGSAPRKADAGNRRGGVPTAGPAALAAAVSARDASGGGATMKRRDGSASRHSD
STSA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgtgatagctcctcagtttgccgcgcttggccttgccgagccgctttgccgcgcc
cttgaggccgccggctacgaaacgcccacccccattcagaccgcctccatcccgaaggtg
ctgacaggcagagaccttctcggcctcgcccagaccggaaccggcaagaccgcagccttc
tgcctgccgatcctgcagcgactggcgcaaaatccgaagaagcccgtgccgcgctccatg
cgtgccctgatcctcgctccgacgcgggaactggcgctccagatcgccgagggcatggca
aaatacggcaagttcgccaagctgcgtcatacgaccatcttcggcggcgtcggccaggga
ccgcaggtcaaggccatgtccggcggcctcgacatcgtcgtcgccactccgggccgtctg
cttgatctcgtcgagcagcgcctcgtgcgtctcgacagtgtcgaatgcctcgtgctcgac
gaagccgaccgcatgttcgacatgggcttcattcgcgacgtgcgccgcatcgtcaagctg
accccgaagcagggccgccagtcgctgctcttctccgccacgatgccgaaggagatcgag
catctggcgatggaggtcctcagcgatccggaccgcgtcgccgtgacgccggaagtcgtg
accgtcgagcggattgaccagcgactctaccacgtgccgacggccgccaagcgcggactt
ttgtccgatcttctggccgacaacgacatgcgccgcgtcatcgtcttcacccgcaccaag
cacggcgccaaccgggtcgccgaacagcttgaaaagggcggcatcgctgccgctgcgatc
cacggcaacaagagccagggcgcccgccaacgcgcgctgtccagcttccgcgacggatcg
ttgcgcgtgctggtcgcgaccgacatcgccgcccgtggcatcgacgtgccggaaatcagc
cacgtcgtgaactacgacctgccggtcgagccggaaagctatgttcaccgcatcggccgc
acggcccgtgccggcgccgaaggcatctcgatttccttctgcgatgcctccgaacgcggc
gcgctgaagcagatcgagcgtctcatcaaacgccccctgcccgtggtgggcaagatcgac
gccaagccctccgacgagatcggcggcacgcatgagcgggccgattccggaccggaccgt
ttcagccggcagcgccagggccagaagaagccgaaccggagcggcaacagcccgaacggc
aatggccgccacaagaagccctccggcagtgcgccgaggaaggcagacgcgggcaaccgg
cgcggcggcgttcccaccgccggcccggccgcccttgccgcagcggtctcggcacgcgat
gcctcgggcggcggagcgaccatgaagcgccgggacggatcggcctctcgccactccgac
agcaccagcgcctga
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