KEGG   Halobacterium sp. DL1: HALDL1_08665Help
Entry
HALDL1_08665      CDS       T03878                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hdl  Halobacterium sp. DL1
Pathway
hdl03030  DNA replication
hdl03410  Base excision repair
hdl03420  Nucleotide excision repair
hdl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hdl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HALDL1_08665
   03410 Base excision repair
    HALDL1_08665
   03420 Nucleotide excision repair
    HALDL1_08665
   03430 Mismatch repair
    HALDL1_08665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hdl03032]
    HALDL1_08665
   03400 DNA repair and recombination proteins [BR:hdl03400]
    HALDL1_08665
Enzymes [BR:hdl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HALDL1_08665
    6.5.1.6  DNA ligase (ATP or NAD+)
     HALDL1_08665
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HALDL1_08665
DNA replication proteins [BR:hdl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    HALDL1_08665
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     HALDL1_08665
DNA repair and recombination proteins [BR:hdl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HALDL1_08665
   NER (nucleotide excision repair)
    Other NER factors
     HALDL1_08665
   MMR (mismatch exicision repair)
    Other MMR factors
     HALDL1_08665
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AHG03660
UniProt: W0K2D4
LinkDB All DBs
Position
complement(1368174..1369841)
Genome map
AA seq 555 aa AA seqDB search
MEFGSFAAHAADIEAEPADLEVVALVTDLFADADDDLGVVARFVQGRVFPAHSETKLDIG
PRLCYEALARAAGTNVSVSDVEDRLAETGDIGEVATSLDLGGQAGLAAFGDESGGDDLTV
TAVFTELEALAAAEGDGSQDEKVTLLFGLFNRCSSEEARYLARLVLGEMRIGVGEGTVRD
AIAAAFDLPVDAVKRALQVSNDYGLVAETARDDGESGLDAMHLEVGRPVQAMLAQAGTVT
DALEEWAEAAVETKFDGARLQVHWDGENVSLYSRNMEDVTAALPEVVEFVEEHVEAPVIL
DGEAVAVSADGDPLPFQEILKRFRRKHDVEAMRQEVRVELNAFDCLHAGGDDLLEAPFLE
RYERLEAVVGDESAVSELLVTDDPDEIAAFEERALDSGHEGIMLKDPDAAYTPGDRGKHW
LKRKPDVETLDLVVTGAEWGEGRRASFLGTFLLSARDEDDDAFETIGKVATGITDEELAE
LTELLEPHIRAEDGQAVDIEPAVVFEVGYEEIQESPTYSSGYALRFPRFVTVREDKTSET
ADTIERVERTAEKQG
NT seq 1668 nt NT seq  +upstreamnt  +downstreamnt
atggaattcggttcgttcgccgcccacgccgccgacatcgaggccgaaccagcggacctc
gaggtggtcgcgctcgtcaccgacctattcgccgacgcagacgacgacctgggcgtcgtc
gcgcggttcgttcaggggcgagtctttccggcccactcggagacgaaactcgacatcggt
ccgcggctctgctacgaggcgctcgcgcgggcggcggggacgaacgtctcagtgagcgac
gtcgaggaccgcctcgccgagaccggcgacatcggcgaggtggcaacgagcctggacctc
ggcggacaggccggactcgcggcgttcggcgacgagagcggtggtgacgacctcaccgtc
acggcggtgttcacggaactcgaggcgctcgcggccgccgagggtgacggcagccaggac
gagaaagtcacgctgttgttcggcctgttcaaccgctgttcgagcgaggaagcgcgttac
ctcgcgcgcctcgtgctcggcgagatgcgcatcggcgtcggcgagggcaccgtccgcgac
gccatcgcggcggccttcgacctgcccgtcgacgccgtgaagcgcgcgctccaggtgtcc
aacgactacggcctcgtggccgagacggcccgcgacgacggcgagtccggactcgacgcg
atgcacctcgaagtcgggcgccccgtgcaggcgatgctcgcccaggctggcacagtcacc
gacgccctcgaggagtgggcggaggcggccgtcgagacgaagttcgacggtgcccgcctg
caggtccactgggacggcgagaacgtctcgctgtactcccggaacatggaggacgtgacc
gccgcgctcccggaggtcgtggagttcgtcgaggagcacgtcgaagcgccggtcatcctc
gacggtgaagcggtagcagtctccgcggacggcgacccgctcccgttccaggagatcctc
aagcggttccgccggaagcacgacgtcgaggcgatgcgccaggaggttcgcgtcgaactg
aacgccttcgactgcctgcacgcgggcggagacgacctgctcgaagcaccgttcctggag
cgctacgagcgcctcgaagcggtcgtcggcgacgagtcggcggtctccgagttgctggtc
acggacgaccccgacgagatagcggccttcgaggagcgcgcgctcgacagcggtcacgag
ggcatcatgctgaaggacccggacgccgcctacacaccgggcgaccgcggaaaacactgg
ctgaagcgcaaacccgacgtggagacgttggacctcgtcgtcacgggagcggagtggggc
gaggggcgacgcgcctcgttcctcgggacgttcctgctgtccgctcgcgacgaggacgac
gacgccttcgagaccatcgggaaggtcgccacgggcatcacggacgaggaactcgcggag
ctcaccgaactgctcgaaccgcacatccgcgcggaggacggccaggctgtcgatatcgag
cccgccgtcgtcttcgaggtcggctacgaggaaatacaggagtccccgacgtactcctcg
ggctacgcgctccgcttcccccggttcgtcaccgttcgcgaggacaagacctcggagact
gcggacaccatcgagcgcgtagagcgcaccgccgagaagcagggatga

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