Halobacterium sp. DL1: HALDL1_08665
Entry
HALDL1_08665 CDS
T03878
Definition
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hdl
Halobacterium sp. DL1
Pathway
hdl03030
DNA replication
hdl03410
Base excision repair
hdl03420
Nucleotide excision repair
hdl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALDL1_08665
03410 Base excision repair
HALDL1_08665
03420 Nucleotide excision repair
HALDL1_08665
03430 Mismatch repair
HALDL1_08665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdl03032
]
HALDL1_08665
03400 DNA repair and recombination proteins [BR:
hdl03400
]
HALDL1_08665
Enzymes [BR:
hdl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HALDL1_08665
6.5.1.6 DNA ligase (ATP or NAD+)
HALDL1_08665
6.5.1.7 DNA ligase (ATP, ADP or GTP)
HALDL1_08665
DNA replication proteins [BR:
hdl03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
HALDL1_08665
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
HALDL1_08665
DNA repair and recombination proteins [BR:
hdl03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
HALDL1_08665
NER (nucleotide excision repair)
Other NER factors
HALDL1_08665
MMR (mismatch exicision repair)
Other MMR factors
HALDL1_08665
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Other DBs
NCBI-ProteinID:
AHG03660
UniProt:
W0K2D4
LinkDB
Position
complement(1368174..1369841)
AA seq
555 aa
MEFGSFAAHAADIEAEPADLEVVALVTDLFADADDDLGVVARFVQGRVFPAHSETKLDIG
PRLCYEALARAAGTNVSVSDVEDRLAETGDIGEVATSLDLGGQAGLAAFGDESGGDDLTV
TAVFTELEALAAAEGDGSQDEKVTLLFGLFNRCSSEEARYLARLVLGEMRIGVGEGTVRD
AIAAAFDLPVDAVKRALQVSNDYGLVAETARDDGESGLDAMHLEVGRPVQAMLAQAGTVT
DALEEWAEAAVETKFDGARLQVHWDGENVSLYSRNMEDVTAALPEVVEFVEEHVEAPVIL
DGEAVAVSADGDPLPFQEILKRFRRKHDVEAMRQEVRVELNAFDCLHAGGDDLLEAPFLE
RYERLEAVVGDESAVSELLVTDDPDEIAAFEERALDSGHEGIMLKDPDAAYTPGDRGKHW
LKRKPDVETLDLVVTGAEWGEGRRASFLGTFLLSARDEDDDAFETIGKVATGITDEELAE
LTELLEPHIRAEDGQAVDIEPAVVFEVGYEEIQESPTYSSGYALRFPRFVTVREDKTSET
ADTIERVERTAEKQG
NT seq
1668 nt
+upstream
nt +downstream
nt
atggaattcggttcgttcgccgcccacgccgccgacatcgaggccgaaccagcggacctc
gaggtggtcgcgctcgtcaccgacctattcgccgacgcagacgacgacctgggcgtcgtc
gcgcggttcgttcaggggcgagtctttccggcccactcggagacgaaactcgacatcggt
ccgcggctctgctacgaggcgctcgcgcgggcggcggggacgaacgtctcagtgagcgac
gtcgaggaccgcctcgccgagaccggcgacatcggcgaggtggcaacgagcctggacctc
ggcggacaggccggactcgcggcgttcggcgacgagagcggtggtgacgacctcaccgtc
acggcggtgttcacggaactcgaggcgctcgcggccgccgagggtgacggcagccaggac
gagaaagtcacgctgttgttcggcctgttcaaccgctgttcgagcgaggaagcgcgttac
ctcgcgcgcctcgtgctcggcgagatgcgcatcggcgtcggcgagggcaccgtccgcgac
gccatcgcggcggccttcgacctgcccgtcgacgccgtgaagcgcgcgctccaggtgtcc
aacgactacggcctcgtggccgagacggcccgcgacgacggcgagtccggactcgacgcg
atgcacctcgaagtcgggcgccccgtgcaggcgatgctcgcccaggctggcacagtcacc
gacgccctcgaggagtgggcggaggcggccgtcgagacgaagttcgacggtgcccgcctg
caggtccactgggacggcgagaacgtctcgctgtactcccggaacatggaggacgtgacc
gccgcgctcccggaggtcgtggagttcgtcgaggagcacgtcgaagcgccggtcatcctc
gacggtgaagcggtagcagtctccgcggacggcgacccgctcccgttccaggagatcctc
aagcggttccgccggaagcacgacgtcgaggcgatgcgccaggaggttcgcgtcgaactg
aacgccttcgactgcctgcacgcgggcggagacgacctgctcgaagcaccgttcctggag
cgctacgagcgcctcgaagcggtcgtcggcgacgagtcggcggtctccgagttgctggtc
acggacgaccccgacgagatagcggccttcgaggagcgcgcgctcgacagcggtcacgag
ggcatcatgctgaaggacccggacgccgcctacacaccgggcgaccgcggaaaacactgg
ctgaagcgcaaacccgacgtggagacgttggacctcgtcgtcacgggagcggagtggggc
gaggggcgacgcgcctcgttcctcgggacgttcctgctgtccgctcgcgacgaggacgac
gacgccttcgagaccatcgggaaggtcgccacgggcatcacggacgaggaactcgcggag
ctcaccgaactgctcgaaccgcacatccgcgcggaggacggccaggctgtcgatatcgag
cccgccgtcgtcttcgaggtcggctacgaggaaatacaggagtccccgacgtactcctcg
ggctacgcgctccgcttcccccggttcgtcaccgttcgcgaggacaagacctcggagact
gcggacaccatcgagcgcgtagagcgcaccgccgagaagcagggatga
DBGET
integrated database retrieval system
