Hyphomicrobium denitrificans ATCC 51888: Hden_3474
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Entry
Hden_3474 CDS
T01265
Name
(GenBank) DNA mismatch repair protein MutS
KO
K03555
DNA mismatch repair protein MutS
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Hden_3474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_3474
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
Hden_3474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
AAA_29
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ADJ25265
UniProt:
D8JY61
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All DBs
Position
3547898..3550738
Genome browser
AA seq
946 aa
AA seq
DB search
MSKPDVQRRNRHVEPDAPTAPPEDGASAEAVRAAVVADATPSMAQYLEIKAANPSSLLWY
RMGDFYELFFEDAVAASEALSIVLTKRGKHQGQDIPMCGVPVHRADEYLQRLIKKGYRVA
VCEQLEDPAEARKRGAKAVVKRDVVRLVTPGTVTEEALLDAKARNYLTAVYCETPHEIGT
TDADARLALASLDISTGEFEVGDVAGSDLVGELIRLAPSEVIVADGLLGDQNFVRAVEYA
GGKVTPIPVAYFNSGAGGRDLKACLGVADLSAFGAFSGSELAAIAAVLKYVDLTQMGRKP
LINPPRKTAGARLFIDAASRASLELVRAASGEKSSTLLAAMDRTVTGAGSRELQARLSSP
LTDPAAIEARLDAVAYLLNDRRLLDELRATLRSAPDLARALPRLGFGRGGPRDLAAVRDA
IGVARRATALLEQSAQPLGLPADLKSVCVRLAQIPADLGTALESALVEEPPLLRRDGAFV
RAGFSGDLDAARALRDDSRKVMAEHEARYIEETGVKTLRVRHNNILGFFIEVTQLNAKPL
LSPPLSERFRHRQTMANAVRFATAELLETEGLIASASERALNLEQEIFTDLSAHIGAAAG
DLGAAAAALAELDVFAALAQLSLEQDYARPQIDASMAFEIRGGRHPVVQQALAKSGAPAF
IENDCVLGSAALETPSDAARTADARIWLVTGPNMAGKSTFLRQNALITVMAQMGSYVPAR
SAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASERSLVILDEIGRGTATFD
GLSIAWATVEYLHGVTKARALFATHYHELTALARKLDGIANVTMDVTEWRDTIVFLHKVK
AGAADRSYGIQVAKLAGLPSAVVVRAREVLDRLEKADRRPRTGDDGLEDLPLFSAVRPKS
GLNERAPSAVEKMLRAMHPDELSPKAALEKIYELKALAETEKKAQS
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacccgacgtgcaacgccgtaaccggcacgttgaacctgacgcgccgacagcg
ccgccggaggatggcgcgagcgcggaagcggtgcgtgcagccgttgttgccgacgcgacg
ccgtcgatggcgcagtacctcgagatcaaggccgccaatccgagcagcctgctctggtat
cgcatgggcgatttttacgagctgtttttcgaggacgcggtcgctgcatcggaagcgctg
tccatcgtgctgaccaagcgcggcaagcatcagggccaagacattccgatgtgcggcgtg
cccgtgcatcgggcggacgaatatctgcagcggctgatcaagaagggctatcgggtcgcc
gtttgcgagcagcttgaagatccggcggaagcgcgcaagcgcggcgccaaggccgtcgtc
aagcgcgatgtcgttcgtctcgtgacgccggggacggtgacggaagaagcgctgctcgat
gccaaggcgcgcaattatctgacggcggtctattgcgaaacgccgcacgagatcggaacg
accgacgcagacgcgcgattggcgctggcgtcgctcgacatttcgacgggcgagttcgag
gtcggcgacgtcgcgggctcagacctcgtcggcgagttgattcggttggcgccgagcgag
gtgatcgttgccgacggcttgctcggcgatcagaatttcgttcgcgcggtcgagtatgcg
ggcggcaaggtgacgcccattcctgtggcctatttcaattccggtgcgggtggtcgcgat
ctcaaagcgtgcctcggtgttgccgatctttcagctttcggggcattttcgggttccgag
cttgcggcgatcgcggcggttctgaaatacgtcgatctcacgcaaatggggcggaagccg
ctcatcaatccgccgcgaaaaacggccggagcgcgtctcttcatcgacgcggcgagccgg
gcgagtctcgaactcgtcagggcggcatctggggaaaaatcctcgacgctgcttgccgcg
atggatcgcacggtgacgggggccggatcgcgcgagcttcaggcgcgattgtccagcccg
ttgaccgatccggcggcgatcgaggcgcggctcgatgccgttgcgtatctgttgaatgat
cgccggcttctagacgagcttcgcgcgacccttcgttccgcgcccgatcttgcgcgcgca
ttaccgcgtcttggattcggacgcggcggacctcgcgatcttgccgccgtgcgggatgcg
atcggagtcgcgcggcgtgcaactgcgcttctcgagcagtctgcgcagccgctcggtcta
ccggcggacctcaagtctgtctgtgtgcgtctggcacagattcctgccgatctcggcacg
gctctggaatcggcgctcgtggaggagccgccgttgcttcgccgcgacggcgcgttcgtg
cgagcgggatttagcggcgatctcgatgcggcgcgggctttgcgcgatgacagccgcaag
gtgatggccgagcatgaagcgcgttacatcgaggaaaccggcgttaagacgctccgtgtc
cgccacaacaacattctcggctttttcattgaggtgacgcagctcaacgccaagccgctt
ctctcgccgccgctgagcgaacgcttccggcatcggcaaacgatggccaatgcggtgcgc
ttcgcgaccgcagagcttctcgaaacggaaggactgatcgcttcggcaagcgagcgagcg
ctcaatctcgaacaggagatttttaccgatctttcggcgcacatcggtgcggctgccggt
gatctgggggcggctgccgcggcgcttgccgaactcgatgtcttcgcggcgctggcgcag
ctttcgctcgaacaggattacgcgcggccgcaaatcgacgcgagcatggctttcgagatc
aggggcgggcggcatccggtcgtgcagcaggcgctggcgaaaagcggtgcaccggcattc
atcgagaacgactgcgttctcggtagcgcggcgctcgaaactccgtcagatgccgcacgt
accgctgatgcgcgcatatggctggtcaccgggccgaacatggcgggcaagtcgacgttt
ctccggcaaaatgcgctgatcaccgtgatggcgcagatggggtcttacgttccagcgcga
tcggcgcacatcggcgtggtcgacaggctgttttcgcgcgttggcgcgtccgatgatctg
gcgcgcggtcgctcgacgttcatggtggagatggtcgaaacggctgcgatcctcaatcag
gcgagcgagcgctcgcttgtcattctcgacgagatcggacgtggaaccgcgacgtttgat
ggattgtctattgcgtgggcgacggtcgaatatctgcatggcgtcacgaaagcgcgcgca
ttgtttgcaactcactatcacgagctgacggcgctcgcgcgcaagctcgacgggatcgcc
aatgtgacgatggacgtcaccgaatggcgcgatacgatcgtcttcctgcataaggttaag
gcaggcgcggccgatcgctcctatggtattcaggtcgctaaactcgcaggtcttccgagc
gccgtcgtcgtccgggcgcgggaagtgctcgatcggctcgaaaaggcggaccgccgcccg
cgcaccggtgatgatgggctcgaagatttgccgcttttctcggcggtgcgacccaaaagc
ggtcttaacgagcgcgcgccgtcagccgttgaaaagatgctgcgagccatgcatcctgac
gaattgtcgcccaaagcggcgctcgagaaaatttacgaactgaaggcgctggctgaaacc
gagaagaaggcgcagtcttga
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