Herbiconiux sp. SALV-R1: HL652_01155
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Entry
HL652_01155 CDS
T06594
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hea
Herbiconiux sp. SALV-R1
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hea03032
]
HL652_01155
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_01155
Enzymes [BR:
hea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HL652_01155
DNA replication proteins [BR:
hea03032
]
Prokaryotic type
DNA Topoisomerases
HL652_01155
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HL652_01155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QJU52392
UniProt:
A0A6M5IPE3
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All DBs
Position
229748..230707
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AA seq
319 aa
AA seq
DB search
MPRLRRSDAAGIGIRRLKSGRGFMYRDADGATITDPELRARIEHLAIPPAWTDVWIAPYA
NGHIQATGIDGAGRRQYIYHPTWREQKDRIKYDRALSLAESLPAARRQVTIDLRKDGYVR
ERVLAAGFRMLDTGSLRVGSERYAQAHGSHGLTTLLCSHATTSGDRVHLSFPAKSGQEWD
SEIVDADLTSLVRSLKRRGGQSRLLAWKDGARWRPVAAEEINEYVKERTGGEFTAKDFRT
LHGTVAAAVSLAHTGPTETKAARSRAVAQAIRDAAAVLGNTPAIAKASYVDPRVIDHYAA
GETIDPARPETELRAMLFE
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcctccgccgttccgatgccgccggcatcggcatccgtcgtctgaagtcgggt
cgtgggttcatgtatcgcgatgcggacggcgccacgatcaccgaccctgagctgcgcgct
cgcatcgagcatctcgcgattccgccggcgtggacggatgtgtggatcgcgccgtatgcg
aacgggcacatccaggcgaccggcatcgacggcgccgggcgtcgacagtacatctaccac
cccacatggcgcgagcagaaagaccgcatcaagtacgaccgagcgctgtcgctcgcggag
tcgttgccggcggcccgccggcaggtcacgatcgatctccgcaaagacggctatgtccgt
gagagggtgctcgcggcggggttccggatgctcgacaccggctcgctgcgggtcggcagt
gagcggtacgcccaggcccacggcagccacggcctcaccactctgctgtgctctcacgcc
accacgagcggcgaccgggttcatctctcctttccggcgaagagcgggcaggagtgggac
tcggagatcgtcgacgccgacctcacgtcgctggtgcggagcctcaagcgacgcggggga
cagtcgcgcctgctcgcctggaaggacggcgcgcggtggcggcccgtggccgctgaggag
atcaacgagtacgtcaaggaacgcaccggtggtgagttcaccgcgaaggacttccgcacc
ctgcacggcactgtcgccgctgcggtgagcctggcccacacgggcccgacggagaccaag
gccgcgcgcagccgggctgtcgcgcaggcgatcagggatgcggccgcggtgctcggcaac
accccggcgatcgccaaggcgagctacgtcgaccctcgcgtgatcgaccactacgccgcg
ggggagaccatcgacccggcgcgccccgagaccgagctgcgcgcgatgctcttcgaatga
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