Halomonas elongata: HELO_1230
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Entry
HELO_1230 CDS
T01311
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hel
Halomonas elongata
Pathway
hel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HELO_1230 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hel03021
]
HELO_1230 (rpoC)
03400 DNA repair and recombination proteins [BR:
hel03400
]
HELO_1230 (rpoC)
Enzymes [BR:
hel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HELO_1230 (rpoC)
Transcription machinery [BR:
hel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HELO_1230 (rpoC)
DNA repair and recombination proteins [BR:
hel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HELO_1230 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
CBV41113
UniProt:
E1V5K1
LinkDB
All DBs
Position
275349..279566
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLVKVLKSQSQSDEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFMVVDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQAMLKDIDLEEEIERLREEIPQTNSETKIKKLSKRLKLLEAFQGSGNDPAWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQLNGQASTIKAAKKMVERELPEVWDILAEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLES
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTRERINAKGEGMVFSGLDEVERAFGTQ
SVSLHARVKVRLDEVIIEEEGGEKTYSRKVYDTTVGRALLYRILPEGAPFELVDQPMKKK
AISKLINEVYRRAGLKPAVIFADQLMYTGFRMATWSGASIGVNDFVIPDAKAEIVEGAEE
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDQVAKAMMAGISKEKVVDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITEADCETENGLTLHPVIEGGDIIVSLAQRV
LGRVVAQDVIDPNTEEVLIPRGTLLDEKWCAELDTMGVDEIVVRSAISCQTPHGVCSACY
GRDLARGHQVNVGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADEHGREREYYKLPYGAELSVKDGEAVEAGQAVAK
WDPHTHPIVAEAEGQVQYADMDEGVTIHRSVDEMTGLSSIEVIESAARPMAGRDKRPMIL
LADETGKPVTVTGSDTPVQYLLPGKAVVTVDNGSRIGVGEVVARIPVEATGNKDITGGLP
RVADLFEARKPKEPAILAEVSGVISFGKETKGKRRLTITPEDGDPFEMLIPKWRQIAVFE
GETVEKGEVISDGPSNPHDILRLLGIAELAKYIVAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDAGDSDFIPGDQVELVRVLEENARLANEDKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDAERML
HPSAQDVEQELGAQLTALDSDDDDI
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcagtctcagtccgacgagttcgacgcgatc
aagattaccctggcgtcgccggacatgatccgcagctggtccttcggcgaggtcaagaaa
cccgaaaccatcaactatcgtaccttcaagccggagcgtgacggcctgttctgcgccaag
atcttcggtccggtgaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcatcatctgcgagaagtgcggcgtcgaggtcaccaaggccgccgtgcgccgcgag
cggatgggccacattgagctggcgagccccgtcgctcacatctggttcttgaagtcactg
ccgtcacgcatcggcatgttcctcgacatgaccctgcgcgacatcgagcgcgtgctctat
ttcgagagcttcatggtcgtcgatccgggcatgaccactctcgagcgcggccagctgctc
aacgacgagcagtatttcgaggccctcgaggagttcggcgacgacttcgacgcccgcatg
ggcgccgaggcggtgcaggccatgctcaaggacatcgatctcgaggaagagatcgagcgt
ctgcgtgaggaaattccgcagaccaattccgagaccaagatcaagaagctctccaagcgc
ctcaagctgctggaagccttccagggatccggcaacgatccggcctggatgatcatggaa
gtgctgccggttctgccgccggacctgcgtccgctggtgccgctggacggcggtcgtttc
gcgacctcggatctcaacgatctctatcgtcgcgtgatcaaccgcaacaaccgcctcaag
cgcctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagcggtcgatgcgctgctcgacaacggtcgccgtggtcgtgccatcaccggttccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcaggggcgtttccgccag
aacctgctcggcaagcgtgtcgactattccggccgttcggtgatcaccgtgggcccgacc
ctgcgtctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
atctattccaagctgcagctcaacggacaggcgtccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgcccgaggtctgggacattctcgccgaggtcatccgcgagcatccg
gtgctgctcaaccgcgcaccgaccctgcaccgtctcggcatccaggccttcgagccgctg
ctgatcgagggtaaggcgattcagcttcacccgctggtctgcgccgcctacaacgccgac
ttcgacggcgaccagatggcggttcacgtgccgctgaccctggaagcccagctcgagtcg
cgggcgctgatgatggccaccaacaacgtgctgtcaccggccaacggcgagccgatcatc
gtgccgtctcaggacgtggtgctgggtctctactacatgacccgcgagcgcatcaacgcc
aagggcgaggggatggtgttctccggcctggatgaagtcgagcgcgcgttcggcacccag
agcgtttccctgcatgcccgcgtcaaggtgcgcctcgatgaggtgatcatcgaggaagag
ggcggcgagaagacatacagccgcaaggtctacgacaccaccgtggggcgtgcgctgctg
taccgcatcctcccggagggcgcgcccttcgagctggtcgaccagccgatgaagaagaag
gcgatctcgaagctgatcaacgaagtctatcgtcgtgccggcctgaagcccgcggtgatc
ttcgccgaccagttgatgtacaccggcttccgcatggccacctggtccggcgcctcgatc
ggcgtcaacgacttcgtcatcccggatgccaaggcggaaatcgtcgagggcgccgaggaa
gaagtgaaggaaatcgaggaccagttctcctccggtctggtgaccgcgggcgagaagtac
aacaaggtcatcgatatctgggcccgcgccaacgaccaggtcgccaaggcgatgatggcc
gggatttccaaggaaaaggtggtcgatcgcgaaggcaacgaggtcgagcaggattccttc
aacagcgtcttcatcatggccgactccggcgcccggggtagcgcggcgcagatccgccag
ctggccggcatgcgtggcctgatggccaagccggatggctcgatcatcgagacgccgatc
gtcgccaacttccgtgaaggcctgaacgtactgcagtacttcatctcgacccacggggcg
cgtaagggtctggcggatacggcactgaagaccgccaactccggttacctgacccgtcgc
ctggtcgatgtggcccaggacatggtcatcaccgaggccgactgcgagaccgagaacggc
ctgaccctgcatccggtcatcgagggtggcgatatcatcgtttccctggcgcagcgtgtg
ctgggccgtgtggtcgctcaggacgtcatcgatccgaacaccgaggaagtgctgattccg
cgcggcaccctgctcgacgagaagtggtgcgccgagctcgataccatgggtgtcgacgag
atcgtggtgcgcagtgccatctcctgtcagacgccgcatggcgtgtgttcggcctgttat
ggccgtgatctggcgcggggccatcaggtcaatgtcggtgagtcggtgggtgtcatcgcc
gctcagtccatcggcgagccgggtacccagctgaccatgcggaccttccacatcggtggt
gcggcatctcgtgcctccgccgtggacagcgtccaggtcaagcatggcggcaaggtgcgc
ctgcacaacatcaagcacgtcgagcgcgccgatggcaagttggtcgtggtctcgcgttcc
agcgccctggccgttgccgacgagcatggtcgcgagcgtgagtactacaagctgccctat
ggcgccgagctgtcggtcaaggatggcgaagcggtcgaggccggccaggccgtggccaag
tgggatccgcacacccacccgatcgtcgccgaggccgagggtcaggtgcagtacgccgac
atggacgagggcgtcaccatccaccgcagcgtggacgaaatgaccggcctgtcctccatc
gaggtgatcgagtcggcggcacgtccgatggccggtcgcgacaagcgtccgatgatcctg
ctcgccgacgagaccggcaagccggtgacggtgaccggttccgacacgccggtgcagtac
ctgctgcccggcaaggcggtggtgaccgtggacaacggctcgcgcatcggtgtcggcgag
gttgtcgcccgcatcccggtcgaggcgaccggcaacaaggacatcacgggtggtctgccg
cgtgttgccgacctgttcgaggcacgcaagcccaaggaaccggcaatcctcgccgaggtc
agcggcgtgatcagcttcggcaaggagaccaagggcaagcgtcgcttgacgatcacgccc
gaggatggcgatccgttcgagatgctgatcccgaaatggcgccagatcgcggtcttcgaa
ggcgagaccgtcgagaagggcgaggtgatctcggatggtccgagcaacccgcacgatatc
ctgcgcctgctgggcatcgccgagctggccaagtacatcgtcgccgaagtgcaggacgtc
tatcgcctgcagggtgtgggcatcaacgacaagcacatcgaagtgatcgtgcgtcagatg
ctgcgcaaggtggaaatcaccgacgccggtgattccgacttcatcccgggtgatcaggtc
gaactggtgcgcgtgctcgaagagaacgcccgcctggcgaacgaggacaagttcccggcc
aagtaccagcgcctgctgctgggtatcaccaaggccagcctggccaccgagtcgttcatc
tccgcggcctccttccaggagaccacgcgagtgctgaccgaggcggcggtcaccggcaag
cgcgattatctgcgtggcctgaaggaaaacgtggtggtgggacgtctgatcccggccggt
accggcttgacgcaccacgccgagcgtcgtcgcaagcgggaggatgccgagcgcatgctc
cacccatccgcccaggacgtcgagcaggagctgggtgcccagcttaccgcgctggactcg
gacgacgacgatatctga
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