KEGG   Heterocephalus glaber (naked mole rat): 101702301Help
Entry
101702301         CDS       T02812                                 

Gene name
Lig1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hgl  Heterocephalus glaber (naked mole rat)
Pathway
hgl03030  DNA replication
hgl03410  Base excision repair
hgl03420  Nucleotide excision repair
hgl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hgl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101702301 (Lig1)
   03410 Base excision repair
    101702301 (Lig1)
   03420 Nucleotide excision repair
    101702301 (Lig1)
   03430 Mismatch repair
    101702301 (Lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hgl03032]
    101702301 (Lig1)
   03400 DNA repair and recombination proteins [BR:hgl03400]
    101702301 (Lig1)
Enzymes [BR:hgl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101702301 (Lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     101702301 (Lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     101702301 (Lig1)
DNA replication proteins [BR:hgl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    101702301 (Lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     101702301 (Lig1)
DNA repair and recombination proteins [BR:hgl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     101702301 (Lig1)
   NER (nucleotide excision repair)
    Other NER factors
     101702301 (Lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     101702301 (Lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDR
Motif
Other DBs
NCBI-GeneID: 101702301
NCBI-ProteinID: XP_004867084
LinkDB All DBs
Position
Un
AA seq 918 aa AA seqDB search
MQRSIMSFFHPMKEGKAKKPEKETNNSSREMEPPPKVALKEWNRVVPESESPVKRPKRKV
VPALSSEGEEEDEALSPTKDQNPGPGSPQGSPSSPATSPKNSPSLSDTSPMDVSPSGIPK
RLTARKQLPKRVIQADLEDQSEDRNREAKRRRKEEKEAEVPGESPTETGVAEVKEEEERG
QPWTPPELPAPPKAETPTETESVSTPKGTGKQEPQEKDRNKAAPRGPRTLSSFFMPRKPA
VRTQVKEQSGTPGKEEAEGSLDPVSYNPAKNNYHPIEDACWSRGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLTLNRLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAVEKGDVGLVAENSRSTQRLMLPPPPLTSAGVFSKFRDIAQLTGSAAV
TKKMDIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLQEHGLEHLPEHCRLSPGVPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVVEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAF
DLIFLNGESLVRQPLSQRRQLLRENFVETEGEFVFATSLDTKDMEQIAEFLEQSVKDSCE
GLMVKTLDVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
AVYDKESEELQAICKLGTGFSDEQLEEHYQSLQALVLPTPRPYVRADGAVAPDHWLDPSA
VWEVKCADLSLSPVYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVACLYRKQ
SQIQNQGIDSDSDNEDFY
NT seq 2757 nt NT seq  +upstreamnt  +downstreamnt
atgcagcggagtatcatgtcatttttccaccccatgaaagagggtaaagcaaagaagcct
gagaaggagacaaacaacagcagcagagagatggagccccctccaaaggtggcactaaag
gagtggaacagagtggtgcctgagagcgagtctccggtgaagaggccgaagaggaaggtg
gtcccggccttgagcagtgaaggggaggaggaagatgaagctctcagccccaccaaagac
cagaatcctgggccaggctccccacaggggtccccttccagtcctgccacaagtcccaag
aatagcccttccctctcggacacctcccccatggatgtctccccatcaggaatcccaaag
cgtctcacagctcggaagcagctcccaaaacgagtaattcaggctgacctggaagatcag
agtgaggacaggaacagggaagccaagaggaggaggaaggaggagaaagaagcagaggtg
ccaggagaaagccccacagagactggggtggcagaagtgaaggaagaggaggagaggggc
cagccctggacaccgcctgagctcccagcgccccccaaagcagagaccccaacagagaca
gaaagtgtttccacacccaaggggactgggaagcaggagccacaggaaaaggaccggaac
aaggctgctcccagaggacccaggaccctcagcagtttcttcatgccccggaagccggca
gtcagaacccaagtgaaggagcagtcaggtactccgggaaaggaggaggccgagggatcc
ctggacccagtaagctacaatcccgccaagaacaactaccatcccattgaggatgcctgc
tggagtcggggccagaaggtcccttacctggccgtggcccggacgtttgagaagattgag
gaggtttctgctcggctccggatggtggagacgctgagtaacctgctgcgctctgtggtg
gccctgtcccctccagacctgctccctgtcctctacctcacccttaaccgccttgggcct
ccccagcagggcctggagcttggcgttggcgatggtgtccttctcaaggccgtagcccag
gccacaggccggcagctggaatctgtccgggccgaggctgttgagaagggtgacgtgggg
ctggtggccgagaacagccgtagcacccagagactcatgctgccgccgcctcctcttacc
agcgctggggtcttctccaagttccgggacatcgcccagctcaccggcagcgctgccgtg
accaagaagatggatatcatcaaaggcctctttgtcgcctgccgccactcagaagcccgc
ttcatcgccagggccctgagtggacggcttcgccttgggctggccgagcagtcggtgctc
gctgccctctcccaggctgtgagcctcacacccccaggccaagaattccctccagccgtg
gtggatgctgggaagggcaagactgcagaggccagaaagacgtggctggaggaacaaggc
atgatcttgaagcagacgttttgtgaggtgcctgacctggaccgaatcatccctgtgctt
caggagcatggcctggagcatctcccggagcactgcaggctgagcccaggcgtccctctg
aagccgatgttggcccatcccactcggggtgtcagtgaagtcctgaaacgctttgaggag
gcagccttcacctgcgagtacaaatacgatgggcagagggcacagatccatgttgtggaa
ggcggggaagtgaagatcttcagcaggaatcaggaagacaacacgggaaagtaccccgac
atcatcagccgcatccccaagattaaactcccctcagtcacatcctttatcctggacacc
gaagcagtggcttgggaccgggagaagaagcagatccagccgttccaagtgcttaccact
cgcaagcggaaggaggtagacgcggcagagatccaggtgcaggtgtgtctgtatgctttc
gacctcatcttcctcaacggagagtccctggtccgtcagcccctgtcacaacgccggcag
ctgctccgggagaactttgtagagacggagggcgagtttgtcttcgctacctccctggac
accaaggacatggagcagatagctgagttcttggagcaatcggtgaaagactcctgcgag
gggctgatggtgaagaccttggatgtgaatgccacctacgagatcgccaagaggtcgcac
aactggctcaagctgaagaaggactacctcgatggtgtgggtgacaccctggacctcgtg
gtgatcggtgcctacctgggccggggaaagcgggccggccgctatggaggctttctgctg
gctgtctatgataaggagagcgaggagctgcaggccatatgcaagcttggaacgggcttc
agcgatgagcagctggaagagcattaccagagcctccaggccctggtgctgcccacccca
cgcccctacgtgcgggctgacggtgctgtggcgcccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgcgctgatctctcgctctcccccgtctaccctgctgcccggggc
ctggtggacagtgagaagggcatctcccttcgcttccctcggtttattcgcgtccgtgaa
gataagaagccagaggaggccactaccagtgcccaggtggcctgtctgtatcgcaagcaa
agtcaaattcagaaccaaggtattgactcagactctgataatgaagatttctactaa

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