Heterocephalus glaber (naked mole rat): 101722009
Entry
101722009 CDS
T02812
Gene name
Lig4
Definition
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hgl
Heterocephalus glaber (naked mole rat)
Pathway
hgl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101722009 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hgl03400
]
101722009 (Lig4)
Enzymes [BR:
hgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101722009 (Lig4)
DNA repair and recombination proteins [BR:
hgl03400
]
Eukaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101722009 (Lig4)
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DNA_ligase_IV
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
APG17
Other DBs
NCBI-GeneID:
101722009
NCBI-ProteinID:
XP_004858619
UniProt:
G5B8M6
LinkDB
Position
Un
AA seq
911 aa
MAASQTSQTVASHVPFADLCSTLERMQKSKGRAEKIRHFKEFLDSWRKFHAALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGTRG
DAGDFAVIAYFVLKPRCLQKGSLNIQQVNELLDSIASNNSARKKDLVKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGFSEKTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYTE
QFGASPSEGSLTPFIYNAFKPDVQICILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYEILNSIFTPVSGRMEVIQKAQAHTKKEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPAVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFQKKAPPSSILC
GTEKPEVYIEPRNSVIVQIKAAEIVPSEMYKTSCTLRFPRIEKIRDDKEWHECMTLDELE
QLRGKASGKLASKHLYVGSDDEPKEKKRKAAPKMKKVIGILENLKAPNLSNISKVSNIFE
DVEFCVMSGTDSHSKLDLENRIAELGGYIVQNPGPDTYCVIAGLENIRVRNIVSSDKHDV
VRPAWLLECFKTKTCLPWHPRFMIHMCPSTRQHFAREYDRYGDSYFVDTDLNQLKEVFSG
IKNSNAQTPKEMAPVIADLEYRYSWDRSSLSMFRHHTVYLDLYTVINDLSTKIEGTRLAI
VALELRFHGAKVVSCLAEGVSHVIVGEDQSRVADFKAFRRSLKKKFKILRECWVTDSIDK
CELEEESQYWI
NT seq
2736 nt
+upstream
nt +downstream
nt
atggctgcctcacaaacttcacaaactgttgcatctcatgttccctttgcagatttatgt
tcaactttagaacggatgcagaaaagtaaaggacgtgcagaaaaaattagacacttcaag
gaatttttagattcttggagaaaatttcatgctgctcttcataagaaccaaaaagatgtt
acagactctttttacccagcaatgagacttattcttcctcagctggaaagagagagaatg
gcttatggaatcaaagaaactatgcttgctaagctttatattgaattgctgaatttaccg
agagaagggaaagatgctcttaaactcctcaattacagaacacctactggaactcgtgga
gatgctggagactttgcagtgattgcatactttgtgttgaagccaagatgtttacagaaa
ggaagtttaaacatacagcaagtcaatgaacttctggactcaattgccagcaataattct
gccagaaaaaaagacctagtgaaaaagagtcttcttcaacttataactcagagttcagca
cttgaacaaaagtggcttatacggatgattgtaaaggacttaaagcttggtttcagtgag
aaaactatattttctgtttttcataatgatgctgctgagttgcataatgtcaccacagac
ctggagaaagtctgtaggcaactccatgacccctctgttggactcagtgacatttctatc
acattgttttctgcctttaaaccaatgctggctgccatcgcagatattgagcacatcgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctcgatggtgaacgcatgcag
atgcacaaagatggagatgtgtatcagtacttttctcgaaatgggtacaactacaccgag
cagtttggtgcttctcccagtgaaggttctcttacccccttcatttataatgcattcaaa
ccggatgtgcagatctgtatcctggatggtgagatgatggcctacaaccccaacacacaa
acttttatgcaaaaggggaataagtttgacattaaaagaatggtagaagattctgacctg
cagacttgttattgtgtttttgatgtgctaatggttaataataaaaagctaggacgtgag
accctgagaaagaggtatgagattcttaatagtatttttacaccagtatcaggtagaatg
gaagtaatacagaaagcacaagctcatacaaagaaagaagtcattgatgcattgaatgaa
gcaattgataaaagagaagagggaatcatgataaaacatcctctgtccatttataagcca
gacaaaagaggtgagggatggctaaaaattaaaccagagtatgtcaatggactgatggat
gaattggacatcttaattgtggggggatattggggtaaaggttcccggggtgggatgatg
tctcattttttgtgtgctgtcgcagagaagccacctcctggtgagaaaccagctgtgttt
cataccctctgtcgtgttggctcaggatacactatgaaagaactgtacgatctaggtttg
aaattggccaaacattggaagccttttcagaaaaaagctccaccaagtagcattttgtgc
ggaacagagaagccagaagtgtacattgagcctcgtaattctgtcatcgtccagattaag
gcagcagagattgtccccagtgaaatgtataaaactagctgcacattgcgttttccaaga
atcgagaagataagagatgacaaagagtggcatgaatgcatgactctggatgagttggaa
caactgagggggaaggcatctgggaaactcgcctcgaagcatctctatgtgggcagtgat
gatgaaccaaaagaaaaaaagcggaaagctgccccaaagatgaagaaagtcattgggatt
cttgaaaacctgaaagcacctaacctttctaacataagcaaagtttcgaatatatttgag
gatgtggaattctgtgtcatgagtggaacagacagtcattcaaaacttgacctggagaac
agaattgcagagcttggaggttacatagtgcagaacccaggccctgacacgtactgtgtg
attgcaggcttggagaacatcagagtgaggaacattgtgtcttcggataaacacgatgtg
gtccgccccgcgtggctgctggagtgttttaagaccaagacctgcttgccatggcatcct
cgatttatgattcacatgtgtccctctacaaggcaacattttgcacgggaatatgatcgc
tatggtgacagctattttgttgacacagatttgaaccaactgaaagaagtgttctcaggg
attaaaaattctaatgcccagactcccaaagaaatggcccctgtgattgcggatctggaa
tatcgttattcctgggaccgctcctctctcagcatgtttcgacaccacactgtttatttg
gacttgtataccgttattaatgacttgagtaccaaaattgagggaacgagattagctatt
gtggctttggagcttcgatttcacggagcaaaagtagtttcttgtttagctgaaggtgtg
tctcatgtgattgttggggaagatcagagtcgggttgcagattttaaagcttttcgaaga
agtcttaagaaaaagtttaaaatcctacgagaatgttgggtaacggattcaatagataaa
tgtgaattagaggaggaaagtcagtattggatttaa
DBGET
integrated database retrieval system
