Halobacillus halophilus: HBHAL_1070
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Entry
HBHAL_1070 CDS
T02031
Gene name
mfd
Definition
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Organism
hhd
Halobacillus halophilus
Pathway
hhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HBHAL_1070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhd03400
]
HBHAL_1070 (mfd)
Enzymes [BR:
hhd01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.-
HBHAL_1070 (mfd)
DNA repair and recombination proteins [BR:
hhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HBHAL_1070 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CarD_CdnL_TRCF
TRCF
UvrB_inter
Helicase_C
DEAD
ResIII
UB2H
DUF3638
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CCG43454
UniProt:
I0JH36
LinkDB
All DBs
Position
68951..72487
Genome map
AA seq
1178 aa
AA seq
DB search
MQGIKDYLYPQDDVHSIIEGFESGMKEQMIAGLSGASRSLMISLLKESLDRPVLLVTHQL
IQAQQLYEDMQELTEEGQVQLYPVNELIASEIAIASPELRSQRIEALSNWLKQDKGILIV
PVAALKRIMPPKSYWEHNQLPFRVGEDIELNAYLEQLVSMGYERTEMVATPGEFSLRGGI
FDIYPLTAEFPYRIELFDTEVDSIRTFDSETQRSHDKLNEVTVGPATELLLHKEDFTRAY
HRLENALSHSLKKLTKADAKETLNTVIEQDLDRLKDQERFQEMYKYIGYFYEESVSLLDY
LPENGLMVLDEMSRIQETANRLDQEEAEWHQSLLEANQTVRDLNISFDWQDTWAKMKHPT
LYMSVFMRHIPNTHPQNVVNISSRQMQQFHGQMNLLKNEMERWQKQDYSIIILAPDHNRS
EKIQSVLEDYDMEAVISKSDVKLPLVKPTIVIGNISSGFEWPMHKLAVLTENELFKTRTA
KPKRKQKLSNAERIKNYQELKVGDYIVHANHGIGKYLGIETLEMNGNHKDFLMVNYSGND
KLYVPIDQIDLIQKYVGSEGKEPKIYKLGGSEWNKVKRKVQSSVEDIADDLIQLYAEREA
SKGHAFSEDGEMQKDFEIAFPYEETEDQVRCIEEIKEDMERIRPMDRLLCGDVGYGKTEV
AIRAAFKAIYEGKQVAILVPTTILAQQHYETLQERFQGFGINLGLMSRFRTRKQQKETTD
RLRKGLVDIIVGTHRILSKDVQFKDLGLLIVDEEQRFGVKHKEKIKQLKHNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVLEYNPIFLREAIEREMARGGQVFFLFN
RVENIERMAQEIAALVPEARVTFAHGQMNETELENVMFSFLGGEYDVLVSTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDMYSQMLKDAIEAKRQGKEQEAVQP
FQPELDMMMDAYIPGTYIQDEKQKIDMYKQFQAVESVEDVHDLRDELIDRFGDYPEEVEN
LFRATSIRLFAKQARIESITEKKRKLEMVMDSDQSQLIDGAKLFEYANKYGRIVQLGTED
NQLKVTFKWDRQPQAKRYEIVEEFLSQLPSMIRETTTA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggaattaaagattatttatatccccaggatgatgtccattcaatcatagagggc
tttgaatcagggatgaaggaacaaatgattgcaggattgtctggagcatcacggagttta
atgatctccttgcttaaggaatcattggaccgccctgtcctgcttgttacccatcaattg
attcaagctcagcagctgtatgaggacatgcaagaactgaccgaggagggccaggttcaa
ttatatcccgtaaacgaactgatcgcctctgaaattgcgattgcaagtcctgaattaaga
agtcagagaattgaggccttgagcaactggctgaagcaagataaagggattcttattgtc
cctgtagctgctctaaaacgcatcatgccgccaaaatcctactgggagcataatcagctc
ccttttcgtgttggggaagatattgagctgaacgcgtatttggagcagctggtgagtatg
gggtatgaacgtacagagatggtagctacccccggagagttctccctgcgtgggggaatc
tttgatatttatccgttaacggcagaatttccttaccggattgaactgtttgataccgaa
gtagattcgattcgtacatttgattcggaaactcagaggtcgcacgataaactgaatgaa
gttacggtaggacctgccactgaattactgctgcataaggaagactttacgagggcatat
catcgattggaaaatgcgctcagccactccctgaaaaagttgacgaaagcggatgcaaaa
gaaaccttgaacaccgtgattgagcaggacctggaccgtttgaaagatcaggaacgcttt
caggagatgtataaatacattggttatttttatgaagagtctgtaagtctgctagactat
cttcctgagaatggactgatggttctggacgagatgagccgtattcaagaaaccgctaac
cgtcttgaccaggaagaagcggaatggcatcaaagcctattagaagcaaaccagacggtc
cgcgacttgaacatctcttttgactggcaggacacgtgggccaagatgaagcatcctacc
ctatatatgtccgtattcatgcgtcatattccaaatactcaccctcagaatgtagtcaat
atttcaagccgtcaaatgcagcaatttcacgggcagatgaatttattgaagaatgaaatg
gagaggtggcagaagcaggattattcaattattattctggctcctgatcacaaccgtagt
gaaaagatccagtcggttttagaagattatgatatggaagctgtcatctctaaatcagat
gttaagctgcctctagtgaagccgacaattgttatcgggaatatcagcagcggctttgaa
tggcctatgcataaattggccgttctgaccgaaaatgaactgtttaaaactcgcacagcc
aagcccaaacgtaagcagaagctttccaatgctgaacgcatcaagaattaccaggagctt
aaagtgggagactatatcgtccacgctaatcacgggattggtaaatacttaggtatagaa
acacttgagatgaatggcaatcataaagattttctaatggttaattattcaggtaatgat
aagctgtatgtcccgatcgaccagattgaccttattcaaaaatatgtgggttctgaaggg
aaagagcctaaaatatacaagctcggtggcagtgagtggaataaagtcaagcgcaaggtt
caatcttcagtagaggatattgccgatgacttaattcagctttacgcagagcgggaagct
tctaaaggtcacgcgttcagtgaggatggcgaaatgcaaaaagattttgagatcgctttt
ccttatgaagaaaccgaggaccaggtgcgttgtatagaagaaattaaggaagatatggaa
cggattcgacctatggaccgcttgttatgcggagatgtcggatacggtaaaacggaggta
gcgatccgagcagcctttaaagcgatttatgaaggcaaacaagtggcgatccttgtacct
accaccatattggctcagcagcattatgaaacccttcaggagcgcttccaagggtttggt
attaacctgggattaatgagccgcttccgcacgcgcaagcagcaaaaagaaacgacagac
agacttagaaaaggattggtggatattatcgtgggcacccaccggattctttcaaaggat
gtacaatttaaagatctggggctgctgattgtagacgaagagcagaggtttggcgtgaag
cacaaagaaaaaatcaaacagctaaagcataatgtggatgttctgacattaacagccact
ccaattcctcgaacacttcatatgtcgatgctcggcgtccgcgatttatcggttattgaa
acgccgcctgcgaaccgttttcctattcaaacgtacgtcctggaatataatccaattttc
ctgcgggaagcgattgaaagagaaatggcgcgcggcgggcaagtctttttcttatttaac
cgtgtggaaaatatcgaacggatggctcaggaaatcgctgcgctcgtccccgaagcccgc
gtaacattcgctcatgggcaaatgaatgaaacggagcttgagaatgtcatgttttccttc
ttgggaggggaatatgatgtacttgtgagtaccaccattatcgaaacaggagtcgatatt
cctaatgtaaatacccttattgtttacgatgcagatcgtatgggcttaagccagctttat
caacttcgcggccgtgtaggccgttcgaaccgtgtggcttatgcttactttacctaccaa
cgggataaagtactgacggaagtcgctgaaaaacgtctccaggctattaaagaatttact
gaattaggctcaggttttaaaatcgccatgcgggatctttccatacgaggagcaggtaat
ttactggggtcgcaacaacatggatttattgattcagtagggtttgatatgtattcacaa
atgctgaaggatgcgattgaagcgaaaagacaaggtaaagaacaggaagccgtgcagccg
ttccagccagaattggatatgatgatggatgcttatattcctggcacatatattcaggat
gaaaagcagaagattgatatgtataaacaattccaggccgtggaatctgtagaagacgtg
catgatttacgtgatgaattgattgatcgcttcggagattatccggaagaagtggagaac
ttattcagggctacttccattcgcctctttgctaaacaggcacggattgaatccattacg
gagaagaaaaggaagctcgaaatggttatggattcagaccaaagccagctgattgacgga
gcgaagctgtttgagtatgccaataaatatggtcgtatcgtacagttaggcacggaagat
aaccagttaaaagtcaccttcaaatgggatcgtcagccgcaggccaagcggtatgagatc
gtcgaggagttcttaagtcaacttccatctatgattcgtgaaacgactacagcttaa
DBGET
integrated database retrieval system
