Candidatus Pantoea carbekii: HHS_01860
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Entry
HHS_01860 CDS
T02865
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
hhs
Candidatus Pantoea carbekii
Pathway
hhs02024
Quorum sensing
hhs03060
Protein export
hhs03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
hhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
HHS_01860 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HHS_01860 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HHS_01860 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
hhs02044
]
HHS_01860 (ffh)
Enzymes [BR:
hhs01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
HHS_01860 (ffh)
Secretion system [BR:
hhs02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
HHS_01860 (ffh)
Eukaryotic Sec-SRP protein
HHS_01860 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
cobW
AAA_22
AAA_31
ABC_tran
Zeta_toxin
AAA_16
YqeC
TraF_2
KTI12
nSTAND3
AAA_14
AAA_24
MeaB
AAA_30
AAA_19
AAA_18
APS_kinase
NACHT
ResIII
PRP9_N
Motif
Other DBs
NCBI-ProteinID:
BAO00156
UniProt:
U3U233
LinkDB
All DBs
Position
270741..272102
Genome browser
AA seq
453 aa
AA seq
DB search
MFDNLTHRLSQTLRNISSRGRLTEDNINNTMREVRMALLEADVALPVVRQFLSRVKEIAI
GQDVNKSLTPGQEFIKIVRNELIITMGAENNTLNLNVNPPAVVLIAGLQGSGKTTSVAKL
GRFLREKHKKKVLVASIDIYRPAAMQQLELLSKQAGVCFYPSNPNEKPVEIAKNSLKSAI
VQFYDVLLIDTAGRVHTDPVMMNEIKQVHTVINPVETLLVVDAMNGQDAINVANTFNEIL
SLTGVILTKVDSDSRGGAALSIRHITGKPIKFLGTGEKNDMLEIFYPDRIASRILGMGDV
LSLIEDIESKVDKIQTEKFAKKIKIGKSFDLNDFLEQLKQMQKMGGIVKLMGKLPGISQL
PNTFKSKLDEKVLMRMEAIINSMTHTERQNPQIIKGSRKRRIAMGCGLQVQDVNRLLKQF
DNIQRMMKKMKKNNITNAVRAMKGIIPPKFLGH
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacaatttaactcatcgtttgtcgcaaactttgcgcaatatcagtagtcgtgga
cgactaactgaagacaatataaacaatacaatgcgagaagtacgtatggcattgttagaa
gcagatgtagcgttaccggtagtacgtcaatttctcagccgtgttaaagaaattgcgatt
ggtcaagatgtcaataaaagtctgacacctggtcaagaatttatcaaaattgttcgtaat
gaattaataattacaatgggagctgaaaataatacgcttaaccttaacgttaacccgcca
gctgtagtgttaatagctggattgcaaggttcaggtaaaactactagtgttgctaaacta
ggtcggtttctgcgagaaaagcacaaaaaaaaagttttagtagcttcaattgatatttac
cgtcctgctgcaatgcagcaattagaattactctcgaagcaagccggcgtatgtttttat
ccatctaatcctaatgaaaaacccgttgaaatcgcaaaaaattctttaaaatcggccata
gttcagttttatgatgtgctgttaatagataccgctggtcgtgttcatactgatccagta
atgatgaatgaaattaaacaggtacatactgtaatcaatccagtagaaacgctgcttgta
gttgatgcgatgaatggccaagatgcaataaatgttgctaatacttttaacgagatacta
tcgcttactggagtaatattaaccaaagttgatagtgattcacgcggtggtgcagctcta
tcaattcgtcatattactggaaaaccgattaaatttctaggaactggggaaaaaaatgat
atgctggagatattttatccagatagaattgcatcacgtattcttggtatgggtgatgta
ttatcattaattgaggatattgaaagcaaagtagacaaaattcaaacagaaaaatttgct
aaaaagatcaaaattggtaaaagttttgatttaaatgatttcttagaacagttaaaacaa
atgcaaaaaatgggtggtattgttaagttaatgggtaagttacccggtatcagtcaatta
ccgaatacatttaaatcaaaactagatgaaaaagtattaatgcgtatggaagcaatcatc
aattctatgacacatacagaacgtcaaaatccacaaatcattaagggatcacgtaaacga
cgtattgctatgggttgcggtttacaagtacaggatgtaaatcgtttattaaaacagttc
gataatatacagcgaatgatgaagaaaatgaaaaaaaataatattactaatgcagtacgt
gccatgaagggaataatacctcctaaatttcttggtcactaa
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