KEGG   Heterobasidion irregulare: HETIRDRAFT_236538Help
Entry
HETIRDRAFT_236538 CDS       T03455                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hir  Heterobasidion irregulare
Pathway
hir03030  DNA replication
hir03410  Base excision repair
hir03420  Nucleotide excision repair
hir03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HETIRDRAFT_236538
   03410 Base excision repair
    HETIRDRAFT_236538
   03420 Nucleotide excision repair
    HETIRDRAFT_236538
   03430 Mismatch repair
    HETIRDRAFT_236538
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hir03032]
    HETIRDRAFT_236538
   03400 DNA repair and recombination proteins [BR:hir03400]
    HETIRDRAFT_236538
Enzymes [BR:hir01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HETIRDRAFT_236538
    6.5.1.6  DNA ligase (ATP or NAD+)
     HETIRDRAFT_236538
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HETIRDRAFT_236538
DNA replication proteins [BR:hir03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    HETIRDRAFT_236538
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     HETIRDRAFT_236538
DNA repair and recombination proteins [BR:hir03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HETIRDRAFT_236538
   NER (nucleotide excision repair)
    Other NER factors
     HETIRDRAFT_236538
   MMR (mismatch excision repair)
    Other MMR factors
     HETIRDRAFT_236538
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 20668761
NCBI-ProteinID: XP_009547531
JGI: Hetan2_236538
UniProt: W4K716
LinkDB All DBs
Position
Unknown
AA seq 656 aa AA seqDB search
PYSFLAYALDTLSSTRSRILILNTLTNTFRTIVRFHPASLLPSLYLLSNSLSPSYSAVEL
GLGPSIISKAIMNISGLSSAALKRLYAKTGDAGDVAFEAKSNIRTLIPHPPLLITALYDS
LLKIAHAKGQGAVKQKQAIVEKLLVAAKGEEVRFLVRTFSQHIRVGAVRTSILTALARAM
VLTPPSSLTVKAITMKNTSKKVVDEAEEELIVKFARAESLIKKVFVQHPNYDHMVVALLD
AGLDGLSERVPLTVGIPLHPTLGSPMRSLAEVYERLGNLPFVAEFKYDGQRAQIHAWKGE
DSDISVKLFSRHLEDMTEKYPDITSMVHHIFSESPSMSSFILDSEIVAVDANNGGLKSFQ
ELSNRPRKGVQLQDIKVAVCAFGFDLMYLNGEILLETPFRQRRALLRSHFPSVIPTQKGA
ARFDHVESCESEEGTEAIEEFWMRSVDSRCEGLMIKLLDSGDIAESAKEKGEGSRKKPLP
ATYEPDKRTSAWLKLKKDYVMGIGDSLDLIPVGAWHGNGRKAQWWSPVLLALRDPDSGRL
VAMCKCMSGFSDSFYKAMRERYSEASQNCSKHPLWSDVDMGGYKPSVYFRPHEVWEIRGA
DITLSPVSVAAQGLVSDTRGLSLRFPRFIRVREDKATEQASSPEFLVGIWKDQQGK
NT seq 1968 nt NT seq  +upstreamnt  +downstreamnt
ccgtattcatttctggcttatgcattagacaccttatcgtcaacacgctcgcgtatcttg
attctaaatacgctcaccaacacttttcgtacgattgttcgcttccacccagcgtctctc
ttgccctctctttatctgctgtcaaactccttgtcgccttcgtactcagctgttgagctt
ggtctcgggccctctatcatatcgaaagcaatcatgaatatatcaggtcttagctctgcc
gccctcaagaggctctacgcgaagactggtgacgctggagacgtcgccttcgaagccaaa
tccaatattcgcactctaatacctcacccccctcttctaatcactgccctctacgattct
ttgctgaagatcgcccatgcgaagggtcagggggcagtcaagcagaaacaggcaatcgtt
gagaaacttcttgtggcggccaagggcgaagaggttcgcttccttgttcgaacgttttca
cagcacattcgtgtcggggcggtcaggacttccattttgactgctctggctcgggcaatg
gttttgacgcctccttccagccttaccgtcaaagctatcaccatgaaaaacacgtcaaaa
aaggtggttgatgaggccgaggaggagcttatagtaaaattcgcccgagcagaaagcctg
ataaagaaggtttttgtgcaacatcctaattacgaccacatggttgtggctctcttagac
gccggccttgatgggctctcagagcgcgttccgctcacagtaggcatacctctacatcca
acactcggatctcccatgcgatcattggccgaagtctacgaacgtcttgggaaccttcca
tttgtggccgaattcaagtatgacggtcaacgagcccagatacatgcctggaagggcgag
gatagcgacatatctgtgaaattattttcgagacacttggaagatatgactgaaaaatat
ccagatatcacgtctatggtacatcacatattcagtgaatcgccctcgatgtcgtccttc
atacttgattcggaaatcgtggccgtcgacgccaacaatggggggctcaaatctttccag
gagctttcgaatcggccgcgcaagggcgtgcaacttcaggacatcaaggtagcggtgtgc
gcttttgggtttgatttgatgtacctcaatggggagatactgttggaaaccccctttcga
cagagaagagctcttcttcgcagccatttcccctccgtcatcccaacacagaagggggca
gcccgatttgatcatgtcgaaagctgtgagagcgaagaagggacagaagcaattgaggaa
ttttggatgcggtcggtggatagtcgctgcgaaggtttgatgattaagcttcttgatagc
ggggacattgcggaaagcgctaaggagaaaggcgaagggtcgcgaaagaagccgttgccc
gcgacatacgaacctgacaaaaggacatccgcatggctcaagttgaagaaggattatgtg
atgggcatcggtgatagccttgacctcatccctgtcggcgcatggcacggtaacggacga
aaggcccagtggtggagccctgtcttacttgcgttgcgagatcccgattccgggagactt
gtcgcgatgtgtaagtgcatgtcagggttctcggatagcttctacaaggctatgagagaa
cggtacagtgaagcgtcccaaaattgttccaaacatcctttatggagtgatgtcgatatg
ggcggctacaaacctagtgtctacttcaggccccacgaggtctgggagatccgcggtgcg
gacatcaccctaagtccggtctcagttgccgctcaaggactggtatccgacaccaggggg
cttagcctgcgttttccgcgctttatacgggtccgagaagacaaggcaacagagcaggcg
agcagtcctgaatttttggtgggaatatggaaggaccaacaaggaaag

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