Haemophilus influenzae 86-028NP (nontypeable): NTHI0659
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Entry
NTHI0659 CDS
T00248
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hit
Haemophilus influenzae 86-028NP (nontypeable)
Pathway
hit02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hit00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NTHI0659 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hit03021
]
NTHI0659 (rpoD)
Transcription machinery [BR:
hit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NTHI0659 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DNA_ligase_A_N
ZnuA
HTH_20
SURF2
BUD22
Motif
Other DBs
NCBI-ProteinID:
AAX87582
UniProt:
Q4QN15
LinkDB
All DBs
Position
623505..625376
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AA seq
623 aa
AA seq
DB search
MEKNQQSTAEQYSEQIEQLMELGRTQGYLTFAEINDLLPEDAIDPEYYDKLLQTLQNDAG
IPVLDEAPESDDMMLSDTIPDEDAVEEATQILSNVESEIGRTTDPVRMYMREMGTVDLLT
REDEISIAKRIEGGIDEVQTSIAAYPEALNGLLKNYDDVEKGNFRLTDLITGFVDPNAEI
EEHNGLDEDFSDEDDEEESSNADVEDNESESTSDSSDSDNSIDPEVAREKFQQLREQHSK
TLAVIEKHGRSGKRAQDQIALLGEIFKQFRLVPKQFDLLVLSMKEMMKRVRYQERQLQKI
LVDIAGMPKDDFEKIITANGSNSEWVAKALKSSKPWAKRLIKYEDRIYEALNNLAITEEN
TKLTITQMRDICDAVARGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQL
LQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLEL
PLDSATAQSLKVATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSETLRSFLDE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaatcaacaatctacggctgaacaatattcagaacaaattgagcaattgatg
gagctaggtcgtacacaagggtatttaacttttgctgaaatcaatgacttattgcccgaa
gatgctattgatcctgaatattacgacaaattgctacaaacgttgcaaaatgatgcaggt
atccctgtattagatgaagcaccagaaagcgatgatatgatgttgagtgataccatccct
gatgaagatgcagtggaagaagcaactcaaattctttcaaatgtagaatctgaaatcggt
cgaacaacggatcccgtacgcatgtatatgcgcgaaatgggaacggtggatcttcttact
cgtgaagatgaaattagcattgcaaaacgtattgaaggagggattgatgaagttcaaacc
tctatcgcagcctatcctgaagcattaaatggattactaaaaaactatgatgatgtagaa
aaaggtaatttccgtttgaccgatttaattacgggttttgttgatccaaatgccgaaata
gaagaacacaacggacttgatgaagacttttctgacgaagatgatgaagaagaatctagt
aatgcagatgtggaagacaatgaatcagaatctacatcagattcaagcgactctgataac
agtattgatcctgaagttgctcgcgaaaaatttcagcaattaagagaacagcactctaaa
acccttgctgttattgaaaaacacggtcgctctggaaaacgtgcccaagatcaaattgca
ctacttggcgaaatttttaaacaattccgtttagtaccaaaacaatttgatttactcgtt
ctatcaatgaaagaaatgatgaaacgtgtgcgctaccaagaacgtcagctacaaaaaata
ttagtggatatagcaggaatgccaaaggatgattttgaaaaaattattaccgctaatggc
agtaacagtgaatgggtagcaaaagcattaaaatctagcaaaccttgggctaaacgttta
attaaatatgaagatcgtatttatgaagccttaaacaatctagcgataacagaagaaaat
actaaacttaccattactcaaatgcgtgacatttgcgatgcagtcgcacgaggcgaacaa
aaagcacgtcgagctaaaaaagaaatggttgaagctaacttgcgtttagtaatttccatc
gcgaaaaaatacacaaatcgaggtttacaattcttagatttaattcaagaagggaatatc
ggtttaatgaaagcggtagataaatttgaatatcgacgtggctacaaattctctacatat
gctacttggtggattcgtcaagcaatcactcgctctattgcggatcaagcgcgtacaatc
cgtattcctgtgcatatgattgaaacaatcaataaacttaatcgtatttctcgccagtta
ctacaagaaatgggacgtgaagcaacaccagaagaattggcagaacgtatgggaatgcca
gaagataaaatccgtaaagtactgaaaattgcaaaagagccgatttcgatggaaacacct
attggcgatgacgatgattcacatttaggcgattttattgaagattcaaccttagaactt
cctcttgattctgccacagcacaaagtttaaaagttgcaactcacgaagtgctagaaggc
ttgacgccacgtgaagcaaaagtattacgtatgcgttttggcattgatatgaataccgac
catacgcttgaagaagtgggtaaacaattcgatgtaacacgcgaacgtattcgtcaaatt
gaagcaaaagcattacgtaaattacgtcatcctagccgttctgaaacactgagaagtttt
ttagatgaatag
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