Hydra vulgaris (swiftwater hydra): 100196971
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Entry
100196971 CDS
T01080
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03030
DNA replication
hmg03420
Nucleotide excision repair
hmg03430
Mismatch repair
hmg03440
Homologous recombination
hmg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100196971
03420 Nucleotide excision repair
100196971
03430 Mismatch repair
100196971
03440 Homologous recombination
100196971
03460 Fanconi anemia pathway
100196971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hmg03000
]
100196971
03032 DNA replication proteins [BR:
hmg03032
]
100196971
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100196971
Transcription factors [BR:
hmg03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100196971
DNA replication proteins [BR:
hmg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100196971
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100196971
MMR (mismatch excision repair)
100196971
DSBR (double strand breaks repair)
HR (homologous recombination)
100196971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
POT1
HROB
Pox_vIL-18BP
Motif
Other DBs
NCBI-GeneID:
100196971
NCBI-ProteinID:
XP_047141686
LinkDB
All DBs
Position
10:complement(21441102..21514374)
Genome browser
AA seq
636 aa
AA seq
DB search
MSLTAGAIQAIITAPDHEHMPVQPVVQILGIKKLQAGPGANERYRLVLSDGEHYYTSAML
GTQLNDTVQEDMVEVRCVLQMDKYTCNVIQGTRKVIIILELKIVLKASEVPGKIGEPVQI
SDLLTEQENLLPPPIKKENVNGSSKLQNISNQIKSASTNNTKNLPVPNKPLSNQKPSAYS
AANQKPSGYSTAGAGSVVDSNSKSVFPISSLTPYQNRWTIRARITNKSSIRTWSNSRGDG
KLFSIDLVDESGEIRATAFNEVVDKYYDLLEIGKVYYITKGSLKTANKQYSSLKNDYEMT
LNNDSLVELCNDLCDLPTLQFNFKQIKSIEDVNKDALIDIVGIVKSSSEMQQITSKATNK
QVWKRDITIVDQSGSAVQATIWGSEAEKFEEYTDKNPVVAIKGAKVSDFGGRSLSILNSS
IFHINPDIPEAYELRGWFDNGGINEQTTSISGQRMEGAGGGKYKTLGQIKDEGLGMGEKP
DYFNVRAFIVFYRKENCMYQACPGADCNKKVIEDNGQFRCEKCDRTYPDFKYRMVLSANI
ADFSGNQWITAFQESAEAILGVSAEQIGHLKDSDVSQFDMIFSEACFKPFVFKVRAKMET
YQDERKLKCSAMSAAPVNFKQECKRLLDEIKNLERL
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttacagctggtgctattcaggctattatcacagctccagaccatgaacatatg
cctgttcaacctgttgttcaaatattggggataaaaaagctgcaggctggtcctggtgca
aacgagagataccgcttggttttatcagatggagaacattattacacgtctgccatgctg
ggcacacaactaaatgatacggtacaagaagatatggtagaggtgagatgtgtattacag
atggataaatatacctgcaatgtgattcagggtacaaggaaagtgattatcattcttgaa
ctaaagatagtattaaaagcatctgaggttcctggaaaaattggagaaccagtacagata
tccgatttgttaactgaacaagaaaatcttctaccaccgcctattaaaaaagaaaatgtc
aatggaagctcaaaactgcaaaatatttcgaatcaaattaaatctgcttcaacaaataat
acaaaaaatctacctgttccaaacaagccattgtcaaatcaaaaaccatctgcttattca
gcagccaatcaaaaaccatctgggtattcaacagcaggagcaggaagtgttgttgactca
aattcaaaatcagtgttcccaatctcatcattaacaccatatcaaaacaggtggacaatt
cgtgcacgtataacaaacaaatcatctattcgtacatggagtaattccagaggagatgga
aaacttttcagtatagaccttgttgatgaatcgggggaaatacgtgcaactgctttcaat
gaagttgtagataaatattatgatttactggaaattggaaaggtctactatatcacaaaa
ggatcgttgaagacagctaataaacaatacagttctttaaagaatgattatgagatgaca
ttaaataatgactctttagttgagctttgcaatgatttgtgtgatttaccaacattgcag
tttaatttcaaacaaattaagtctattgaagatgtgaacaaagatgctttaattgatatt
gttggaatagtgaaaagttcttctgaaatgcaacaaataacatctaaagcaactaataag
caagtttggaagcgagatataacaattgtagatcaatcaggctcagccgtacaagctaca
atatggggtagcgaggctgaaaagtttgaggagtacacagataagaatccagttgttgca
atcaaaggtgctaaagtatctgattttggaggtcggtcactgtcaatcttaaattcaagt
atttttcacattaatcctgatatacctgaagcttatgagttgagaggatggtttgataat
ggaggaattaatgagcaaacaacttcaatatctggacaaagaatggagggggcaggtggt
ggaaagtataaaacccttggtcaaattaaagatgaagggcttggtatgggagaaaaacct
gattatttcaatgtgcgtgcattcattgtattttatcgtaaagaaaattgcatgtatcaa
gcctgtcctggtgctgattgtaataagaaagtcattgaagataatggtcagttcagatgt
gagaaatgtgatcggacatacccagattttaaatatcgaatggtattgtcagcaaatatt
gctgatttctcaggtaatcaatggattacagcttttcaagagagtgcggaggcaatttta
ggtgtttctgctgagcaaattggtcatttaaaagattcggacgtgtctcaatttgatatg
atttttagtgaagcatgtttcaaaccttttgtgtttaaagttcgtgcaaagatggagact
tatcaggatgaaagaaaacttaaatgttctgctatgtctgcagcgcctgttaacttcaaa
caagaatgcaaaagacttttagacgaaataaaaaatcttgaaagactatag
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