Hydra vulgaris (swiftwater hydra): 100204486
Help
Entry
100204486 CDS
T01080
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100204486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hmg03041
]
100204486
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100204486
Spliceosome [BR:
hmg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100204486
Complex C
U5 SnRNP specific factors
100204486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P-loop_SecA
AAA_19
PAC2
Motif
Other DBs
NCBI-GeneID:
100204486
NCBI-ProteinID:
XP_047136787
LinkDB
All DBs
Position
7:33611815..33687885
Genome browser
AA seq
789 aa
AA seq
DB search
MSDRKEERDYKSRDVDYDKNREDRHKYKQKEKKEKKKHRHRSRSRTRSRSPDRKRHRSRS
ISKEKDDSSARMAKKKNLLNKELATEDLEEGEWTAPPKREPLSLEEMIAKRDAEKKALEK
PKFLTKEERMAEALKKRQKLAEEQQKKLEAERLSRLQFAKEAERSRDDFDRGDRYSREKY
RREREREREKEKAERTENTDVDGSKDVMLKGRDREKELEAIKNRYLGVIKKKKKIRRLND
KKFVFDWDTSEDTSQDYNALYRERHEALLFGRGNKAGIDIKVQKKESKFYEQLMEKRRTE
SEKLQEIKNSNRIIAKEDKLSHKERHWKMKELHEMTDRDWRIFKEDFSISAKGGKIPNPI
RYWRDSSLPNDILDVILSLGYTDPTPIQRQAIPIGLMNRDIIGIAETGSGKTAAFVIPLL
VWITGLPESDRQSVSDNGPFAIILAPTRELAQQIEEETIKFAKKLGIRTVAVIGGLSRED
QGFQLRLGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQKILEHL
PVTNIKPDTEEAEDVNVIAKNYSSKDKYRQTVMFTATMPPVVERLARTYLRRPAIVTIGS
AGKPVDRVEQKVYMLSAAQKKKKLLEILSNKLDPPVLVFVNQKKGADVLAKSLEKQGFSA
TTLHGGKGQEQREFALNSLKEGNKDILVATDVAGRGIDIKDVSMVINYDMAKNIESYTHR
IGRTGRAGKSGIAVTFLTQEDSEVFYDLKQLLLSSSASSCPSELMNHPDAQHKPGTVLTK
KRREETIFV
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagaaaagaagaaagagattacaaaagtagagatgttgattatgataaaaac
cgggaagatcgtcacaagtataaacaaaaagaaaaaaaagaaaaaaagaaacatcgtcat
cgatcaagatcacgcacaagatcacgctcacctgatagaaaaagacatcggtcaaggtca
atatcaaaggagaaggatgactcttctgcaagaatggcaaaaaagaaaaatttgcttaat
aaagagctggcaacagaggatttagaggaaggggaatggacagctcctccaaaaagagag
ccattatcattagaggaaatgattgcaaagagagatgctgaaaaaaaagctttagaaaag
cccaagtttttaacaaaagaggaacgtatggctgaggcattaaaaaagcgtcaaaaactt
gcagaagagcagcaaaagaaattagaggctgaacgtttatcaaggctacagtttgcaaaa
gaagctgagagaagtcgagatgactttgatagaggagatagatatagcagagaaaagtat
agaagagaaagagaacgtgaacgtgaaaaagaaaaagcagaacgaacagagaatactgat
gttgatggttcaaaagacgtgatgttgaagggcagagacagagaaaaagaacttgaagct
atcaaaaatcggtatcttggagtaataaagaaaaaaaagaaaattcgtagattaaatgat
aaaaaatttgtttttgattgggatacttctgaagatacttcacaagactataatgcatta
tatagagaaagacatgaagctttgctctttgggaggggaaacaaagcagggattgatatt
aaggttcaaaagaaagaaagtaagttttatgaacagctcatggaaaagaggcgaacagaa
tctgaaaaactacaagaaataaaaaattcaaatcgtataatagccaaagaagacaaactt
agccataaagaacgtcactggaagatgaaagaacttcatgagatgacagatcgtgattgg
cgtatttttaaagaggactttagcatttccgcaaaaggtgggaaaattcccaatcccata
cgatactggcgtgattcttctctaccgaatgatattcttgatgttattctcagtttagga
tacacggatccgacaccaattcaacgtcaagccattcctattggtcttatgaatagggat
attattggaattgcagaaactggaagtggtaaaacagctgcttttgttattccactatta
gtatggattactggattaccagaatctgataggcaatcagtctctgacaatggccctttt
gctataatcttggctcctacaagagagcttgcccagcagattgaagaagaaactattaaa
tttgcaaagaaacttggtatacgtacagttgcagtaattggtggactttcaagagaagat
caaggttttcaactgcgtcttggttgtgagattgttattgcaactcctggtcgtcttatt
gatgttttagaaaatcgctatttggttttaagtcaatgttcatacgttgtaatggatgag
gctgatcgcatgattgatatgggatttgaacctgatgttcaaaagattctagaacattta
cctgtcactaacatcaaacctgatactgaggaagctgaagatgttaatgtaattgctaag
aactattcatcaaaagataaatatagacaaactgtgatgtttacagctactatgcctcca
gttgtagaaaggctagctcgtacatatcttaggcgaccagccattgttacaataggttca
gcaggtaaacctgttgaccgtgttgaacaaaaagtttacatgctctctgctgcacaaaag
aaaaagaaactattagaaatattgagtaacaaacttgatcctccagtccttgtcttcgtt
aaccaaaaaaaaggtgctgacgttttggcaaaatcattggagaaacaaggcttttccgca
acaacacttcatggtggtaaaggccaagaacagagagagtttgctttaaattcattaaaa
gaaggcaataaagatattctagttgcaacagatgtagccggtcgtggtattgatatcaag
gatgtatccatggttatcaattatgacatggcgaaaaatattgaaagttatacgcatcgt
atcggtcgcacaggtcgtgctggaaaaagtggtattgctgttacatttttgactcaagaa
gactctgaagtattttacgatcttaagcagttgctgcttagtagttcggcaagcagctgt
ccgagcgaattaatgaatcatccagacgcccaacataagcctggtaccgtattgaccaaa
aaacgaagagaagaaaccatttttgtgtag
DBGET
integrated database retrieval system
