KEGG   Haematobacter massiliensis: HmaOT1_06685Help
Entry
HmaOT1_06685      CDS       T05861                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hml  Haematobacter massiliensis
Pathway
hml03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HmaOT1_06685 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hml03400]
    HmaOT1_06685 (ligD)
Enzymes [BR:hml01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HmaOT1_06685 (ligD)
DNA repair and recombination proteins [BR:hml03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HmaOT1_06685 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: QBJ23967
LinkDB All DBs
Position
1030127..1032652
Genome map
AA seq 841 aa AA seqDB search
MALETYNAKRDFSRTAEPQGKALAGEGGLYVIQKHDARRLHYDLRLELDGVLKSWAVTRG
PSLDPAEKRLAVEVEDHPLDYATFEGTIPKGQYGGGSVIVWDKGHWRPDFDPHAGLKKGH
LEFELDGEKLRGRWHLIRMKPRRGEKRVNWLLIKAEDDEAREAGDILKEEPRSVASGRTV
EEVGKGARAPTKASQGGVAGKAKKTAAPREAGATETRQDKSENTADRPITRVRTTKAEQG
EREKLPDFIEPMLATLARHPPSSGDWLHEIKFDGYRLLARLEKGNVRLLTRSGLDWTERF
AGPLTEALEGLDARAALIDGELVVEKPSGASDFGALQADLSAGRADRFVYYAFDLLHLDG
YGLRSLPLVDRKAALERLIPGQGAVRFSAHFDDAGADVLAHACGLSLEGIISKRSASAYV
SGRGRDWLKAKCALRQEFVIGGFTQSTATPQAIGSLALGVQEAGTLRYVGRVGTGFTAEV
AHDLWSRLTDLETRDNPFSTRLDSTARRGLQHVRPELVAEVEFRAWTSDGRLRHASFRGL
REDKPAGDIVREEEAVERPENVELTHPDRIYWPAEGVTKADLADYYTRVWPRIAPFVTGR
ALALLRCPEGIEGPSFFQKHAWRGIPEQVRQVKDPKAPEDPFVAIDDLDGLIALVQSAVL
EIHPWGSTLQSWEKPDMIVMDLDPGEGITWPDIVSAAGKVRERLEDAGLAAFVKTSGGKG
LHVVAPLTPKATWPSVKSFTKSLAEAMAADEPDHFVATISKAKRKGRILVDYLRNQRGMT
AVAPYSTRARPGAAVSMPVPWEVLPEIGPQDFTVLNIAEHLSSDPWEAFRDSAKPLPSRR
R
NT seq 2526 nt NT seq  +upstreamnt  +downstreamnt
atggcgctggaaacatacaatgccaagcgggatttcagccggaccgccgagcctcagggc
aaggccctggcaggtgaaggtggcctttacgtcatccagaagcacgacgcgcggcgattg
cattacgacctgcggctcgagcttgacggtgtcctgaaaagctgggccgtgacgcgcgga
ccgagccttgacccggcggagaagcgcttggcggtcgaggtggaggatcacccgctcgat
tacgcgacgttcgagggcaccatcccgaagggtcaatacggcggaggcagcgtcatcgtc
tgggacaaggggcattggcggccggatttcgacccgcatgccggtttgaagaagggccat
ctggaattcgaactggacggggagaagttgcgaggtcgctggcatctcatccgcatgaaa
cccagacggggcgagaagcgggtcaactggctgctcatcaaggcggaggacgatgaggcg
agggaggcgggagacatcctgaaggaggagccgcgttccgttgcaagcggccggacggtg
gaggaggtgggcaagggggcgcgcgcgcccacaaaggcttcacaaggcggcgtcgccggc
aaggcgaagaaaacagccgcgccgcgcgaggctggcgcgaccgagacccggcaggacaaa
tcggaaaacaccgcagatagaccgatcacccgggtgcgcacgacaaaggccgagcagggt
gagcgggaaaagctgccggatttcatcgaacccatgcttgcgacacttgcaaggcaccct
ccgtccagcggggactggctgcacgagatcaagttcgacggctatcggctgttggcccga
ttggagaaggggaacgtgcgcctgctcacgcggagcgggctggactggacggagcggttt
gccgggccgctgacggaggcgctggaagggttggacgcccgcgcggcgctcatcgacggt
gaattggtggtggagaagccctccggggcctcggatttcggggccctgcaggccgatttg
tcggccgggcgggcagacaggttcgtctactatgctttcgaccttctgcatctggacggc
tatggcctgcgctccctgcctctggtggacaggaaggcggcgctggagcgcctcattccg
ggtcagggcgcggttcggttcagcgcgcatttcgacgatgccggtgcagatgtgcttgcc
catgcgtgcgggcttagcctggaggggatcatctccaagcggagtgcatccgcctatgta
tcggggcgcgggcgggactggctgaaggcgaaatgcgcgcttcgtcaggaattcgtgatc
ggcgggttcacccagtccaccgccacgccgcaggccattggttcgctggccttgggagtg
caggaagcggggacgctgcgctatgtcgggcgcgttgggacggggtttacggcggaggtg
gcccatgacctctggtcccgcctgacagatctggaaacgcgcgacaaccccttcagtacg
cggctggattcaaccgcgcggcgtgggcttcagcatgtccgacccgagcttgtcgcggaa
gtcgagttccgggcatggacatcggacgggcgcctgcgccacgcgtcgtttcgcgggctg
cgggaggataaacctgcgggagacatcgtgcgggaggaagaagccgtggaacgtcccgag
aatgtagaactcacccatcccgaccgaatctattggccggcagagggtgtgacgaaagcg
gatctggccgattactacacgcgggtctggccgcggatcgcccccttcgtcaccggtcgc
gcgctggcactgctgcggtgcccggagggaatagaggggccgagtttctttcagaagcac
gcatggcgcggcatcccggagcaggtccgtcaggtaaaagatcccaaggccccggaagac
ccctttgtcgcgatcgacgatctcgatgggctgatcgcactcgtgcagtccgccgtcctc
gagattcacccctggggctcgacgctgcagagctgggagaagcctgacatgatcgtcatg
gacctcgaccccggagagggcattacctggcccgatatcgtgagcgcggcgggcaaggtg
cgtgagcggctggaggacgcggggcttgcggccttcgtcaagacctccggtggcaagggg
ctgcacgtggtcgcgccgctgacgccgaaagcgacatggcccagtgtgaaatccttcacc
aagtctcttgcggaagcgatggccgcggacgagccggaccatttcgtggcgacgatcagc
aaggccaagcgcaagggccggatcctggtcgattacctgcgcaatcagcgtgggatgacg
gcggttgccccttattccacccgtgcgcgcccgggggccgcggtttcgatgccggtacca
tgggaggtgctccccgaaatcggcccgcaggatttcaccgtgctgaacatagcagagcac
ctttccagcgatccatgggaggcgttccgggactcggccaaaccactgccgtcgcggcgg
agatga

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