Hyphomonas neptunium: HNE_1908
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Entry
HNE_1908 CDS
T00397
Name
(GenBank) uracil-DNA glycosylase, family 4
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hne
Hyphomonas neptunium
Pathway
hne03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HNE_1908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_1908
Enzymes [BR:
hne01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
HNE_1908
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HNE_1908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ABI76443
UniProt:
Q0C0Y4
LinkDB
All DBs
Position
complement(1975012..1975752)
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AA seq
246 aa
AA seq
DB search
MGVAVDAPLVEALLAAAPALPDAPEQAQALEPAPLRKRGARTVADWVREAETIAAGCANL
DELTAAAGQFSGSPLRASCENTVVYDGTPGASLLVIGEGPGAQEDRQGKPFVGKAGQLLD
KMLAAIGRNRAENALITNVNYWRPPGNRSPEADELAVCRPFVDRFIEVSRPRLIVAAGGI
PAVSLLGSREGIMKLRGNEYCYTTPGGYRVPLIPMLHPAYLLRRPQDKSRAWRDLLLIEK
RLGELE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtggctgtggacgcgcctctggtggaggctttgctggccgcagcgcccgccctt
ccggatgcaccggaacaggcgcaggcgctggagcctgcccccctgcgcaagcgcggcgcc
cgcacggtagccgattgggtccgggaggcagaaacaattgcagcgggctgcgcaaacctt
gatgaactcacggcagcagccggccagttcagtggcagccctctcagggcaagctgcgag
aatacggttgtttacgacggaacgcccggcgccagcctactggtgatcggggaggggccg
ggcgcgcaggaagaccggcagggcaagccttttgtcggcaaggcaggtcagctgctcgac
aagatgctcgccgccattggccgcaaccgcgcggaaaatgccctgattaccaacgtcaat
tactggcgcccgccgggcaaccggagccccgaggccgatgaactggccgtatgccggccc
ttcgtcgaccggtttatcgaggtttccaggcccaggctgatcgttgcggccgggggcatt
ccggcggtttcgctgctcggcagccgcgagggaatcatgaagctgcgcgggaatgaatac
tgttacacgacgccgggcggttatcgcgttcccctgattcccatgctgcatccggcctat
ctgctgcgccgcccacaggataaaagccgcgcatggcgcgaccttctcctgattgaaaaa
cggctgggcgaactggagtag
DBGET
integrated database retrieval system
