Hyphomicrobium nitrativorans: W911_06600
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Entry
W911_06600 CDS
T02943
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hni
Hyphomicrobium nitrativorans
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hni03016
]
W911_06600
Enzymes [BR:
hni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
W911_06600
Transfer RNA biogenesis [BR:
hni03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
W911_06600
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AHB48128
UniProt:
V5SC73
LinkDB
All DBs
Position
complement(1384693..1385850)
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AA seq
385 aa
AA seq
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MHVITSTSDLSDTCSRLADGDFVTVDTEFMREQTFWPDLCLIQLANAREEVIVDPLADGI
DLGPFYELMAKRNVVKVFHAARQDIEIVYSEAGLIPAPVFDTQVAAMVCGFGESVSYVNL
VKKVTGRDLDKSSRFTDWSRRPLSDKQLIYALGDVTHLRDIYTYLRTELATTDRASWLDE
EMAELTDPATYESHPDNAWQRLKMRVKNRKALAVLMELAAWRERMAQTQDVPRGRILRDE
ALYDIANQLPTSTDQLSELRTLSEGFSRSQRAKDIVDAVRRGLDRDPKTVPPLPRNQPLS
AEATAIIELLKVLLKAAAARHRVAPRLIAGSEDLERIASEAEPDVPALKGWRRQLFGEDA
LRLKRGELALTLSKGEVLAIPVNGR
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcattacctccacatccgatctctccgacacctgctccaggcttgccgatggc
gacttcgtcaccgtcgacacggagttcatgcgcgagcagactttctggccggatctctgc
ctgatccagctcgccaatgcgcgcgaggaggtcatcgtcgatccgctcgcggacggcatc
gacctcggccccttttacgagctgatggcgaaacgcaacgtcgtgaaggtgtttcacgcc
gcgcgccaggacatcgagatcgtctactcggaagcgggcctcatcccggcgccggtattc
gacacccaggtggccgccatggtctgcggcttcggcgagagcgtgagctacgtcaacctt
gtgaagaaggtcacgggccgcgacctcgacaagagttcgcgtttcacggactggagccgc
cggccgctctccgacaaacagctcatctacgcgctcggggacgtcacccacctgcgcgac
atctacacgtatctgcgcaccgaactcgccaccaccgaccgcgcctcctggctggacgag
gaaatggccgagctgaccgacccggccacctacgaaagccaccccgacaacgcctggcag
cgcctcaagatgcgggtgaagaaccgcaaggcgctcgcggtgctgatggagcttgccgcc
tggcgcgagcgcatggcccagacgcaggacgtcccgcgcgggcgcatcctccgcgacgaa
gctctctacgacatcgccaaccagcttccgacctcgacggaccagctctcggagctacgc
acgctaagcgaaggcttctcccgctcccagcgcgcgaaagacattgtggatgccgtgcgc
cgcggcctcgatcgcgaccccaagacggtgcctccgcttccgcgcaatcagccgctctcc
gccgaggcgaccgcaatcatcgaattgctgaaggtgctactcaaggccgccgccgcccgt
catcgtgtcgcgccccgcctcatcgcgggctccgaagaccttgagcggatcgcgagcgaa
gccgagcccgacgtcccagccctgaagggctggcggcgccagcttttcggcgaggacgcg
ctgcggttgaagcgcggcgagctggcgctcaccctctccaagggcgaggtgctggccatc
ccagtcaacggccgctga
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