Haliangium ochraceum: Hoch_0826
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Entry
Hoch_0826 CDS
T01103
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03030
DNA replication
hoh03430
Mismatch repair
hoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hoch_0826
03430 Mismatch repair
Hoch_0826
03440 Homologous recombination
Hoch_0826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hoh03032
]
Hoch_0826
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_0826
Enzymes [BR:
hoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hoch_0826
DNA replication proteins [BR:
hoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Hoch_0826
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Hoch_0826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DNApol_Exo
Motif
Other DBs
NCBI-ProteinID:
ACY13441
UniProt:
D0LP76
LinkDB
All DBs
Position
1085837..1086379
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AA seq
180 aa
AA seq
DB search
MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN
GYRRRAWADAVSLGDAMAELAPMLEGAVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHAL
DTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRACLGVARRLLPAMLAGLV
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgctcgtgttcatcgactgcgagaccaccgggcttgacccggaagaacatgaa
atcctcgagatcgcggccatccgcgtgcatccgcggacgctcgaagaggagcgtgcgctg
gtgctgcgtgtgcgtcccgagcgcctcgaagacgccgaccccgaagcgctcgaggtcaac
ggctatcgccggcgggcctgggccgacgcggtgtcgctgggcgatgcgatggccgagctc
gccccgatgctcgaaggcgccgtgctcgccggccacaacgtggccttcgaccggcgcttt
ctcgaggcggcctgggactacgtcggacaccgccccgaaaacctcgaccaccacgcgctc
gacacggccgcgctggcgttcccgttgctcatggccggggagatcgactcgctctcgctc
acgcccgtgtgcgcccacctgggcgtgctccgcggcgaggagcactgggccttcgacgac
gtgcgcgcctgcctgggcgtcgcccggcgcctgctgccggccatgctcgcggggttggtg
tga
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