Haliangium ochraceum: Hoch_5181
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Entry
Hoch_5181 CDS
T01103
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
hoh
Haliangium ochraceum
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoh03019
]
Hoch_5181
03009 Ribosome biogenesis [BR:
hoh03009
]
Hoch_5181
Messenger RNA biogenesis [BR:
hoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hoch_5181
Ribosome biogenesis [BR:
hoh03009
]
Eukaryotic type
Pre-60S particles
RNases
Hoch_5181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DUF4158
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ACY17669
UniProt:
D0LWL9
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All DBs
Position
7133366..7133929
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AA seq
187 aa
AA seq
DB search
MTAKNPLIWMDLEMTGLDPERERIIEIAVLITDNALEIVAEGPDLVVHQPESLLEQMDDW
NRKHHGASGLTERVRASQVSEAEAEAQVLAFLREHVKQGAAPLAGNSIHQDRRFLRRYMP
QIDDYLHYRNVDVSSVKELVKRWYPAVYSKRPSKVGTHRALDDIRESVAELRYYRDQVFV
PLSDDSQ
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
gtgactgccaagaatccgctgatctggatggatctggagatgaccgggctcgaccccgag
cgcgagcgcatcatcgagatcgccgtgctcatcaccgacaacgcgctcgagatcgtggcc
gaaggtcccgatctggtcgtgcatcagcccgagtcgctgctcgagcagatggacgactgg
aaccgcaagcaccacggcgcctcgggcctgaccgaacgcgtgcgcgcctcgcaggtgagc
gaggccgaggccgaggcgcaggtgctcgcgttcctgcgcgaacacgtcaagcagggcgcg
gcgccgctcgcgggcaactccatccaccaggaccgccgctttctgcgccgctacatgccg
cagatcgacgactatctgcactaccgcaacgtcgatgtctcctcggtgaaagagctggtc
aagcgctggtatccggccgtgtacagcaagcgcccgtccaaggtcggcacgcaccgcgcg
ctcgacgacatccgcgagtcggtggccgagctgcgctactaccgcgaccaggtattcgtc
ccgctgtccgatgacagccagtga
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