Glaesserella parasuis SH03: JL26_08895
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Entry
JL26_08895 CDS
T03301
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JL26_08895 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpas03021
]
JL26_08895 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpas03400
]
JL26_08895 (rpoB)
Enzymes [BR:
hpas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JL26_08895 (rpoB)
Transcription machinery [BR:
hpas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JL26_08895 (rpoB)
DNA repair and recombination proteins [BR:
hpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JL26_08895 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
RelB
Motif
Other DBs
NCBI-ProteinID:
AIK17868
LinkDB
All DBs
Position
complement(1732689..1736717)
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKSFGKRSQVLNVPYLLTIQLDSFDKFIQRDPEGLQGLEAAFRSVFPIV
SSNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHASGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILNMFFETVTFHIEDNKLLMT
LVPEHLRGETAAFDIEANGKVYVESGRRITARHIRALEKDNITQIQVPTEYIVGRVTAKD
YVDLSTGEIVCPANSEIGLETLAALAQAGYNEIEVLFTNDLDYGPYISETLRIDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSTDRYDLSAVGRMKFNRSLDIPEGVGTGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVT
EEIEYLSAIEEGAYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYRPEEIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVIAK
RGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPCVKLGEPVGR
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKD
LTEELEILEAGLFTRVRNLLVEGGISEAELDKVAREKWLEQTLEDEAKQNQLEQLAEQHE
ELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAARGIGDQINAMIKQQQSVA
KLREYIQKAYDLGHGSQSVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLE
LGGLPTSGQITLYDGRTGERFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIP
ESFNVITKEIRALAIDMELDEA
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcatattccgagaaaaagcgtattcgtaagagctttggcaaacgctcacaa
gttctgaacgtaccttatctattaacaattcagctcgattcttttgataaatttatccaa
agagatcctgaaggacttcaaggtttagaagcggcattccgttcagtgtttccgattgtg
agcagcaacggtgcaactgaattacaatacgtttcttacgaattaggcgaacccgtattt
gatgtgcgtgaatgccaaattcgtggtacaacctatgcagcgcctttacgcgtaaaactt
cgtcttgtgacctttgatcgcgaagcggcagcaggcacagtaaaagacatcaaagaacaa
aacgtctatatgggcgaaatcccattgatgaccgacaacggtactttcgtgatcaacggt
actgagcgtgttatcgtttctcagttacaccgtagtccgggtgtattcttcgattctgac
aaaggtaaaacccacgcttcaggtaaagtgctttataacgcacgcatcattccttaccgt
ggttcttggttagatttcgagttcgatccgaaagacaacctgtatgcgcgtatcgaccgt
cgtcgtaaattaccagcaaccattattctgcgtgcgttaggatacacgactgaagaaatc
ttaaatatgttcttcgaaaccgtgactttccacattgaagacaacaaattgctaatgacc
ttagtgcctgagcatcttcgtggtgaaacggcagctttcgacattgaagcaaacggcaaa
gtctatgttgaaagtggtcgtcgtatcaccgctcgtcacattcgtgcattagaaaaagac
aatattacccaaatccaagtgccgactgaatatattgtcggtcgtgtgacagcgaaagat
tatgttgatctttcaacaggtgaaattgtttgcccagcaaacagcgagatcggtttagaa
acccttgcagcattagcacaagcaggttacaacgagatcgaagtattatttactaacgat
cttgattacggtccgtacatttctgaaaccttgcgtatcgatccaacttacgaccgttta
agtgcgttagtggaaatctatcgtatgatgcgtccaggtgagccaccaacaaaagaagcg
gctgaagcattatttgacaatatgttcttctcaaccgaccgctatgatctttctgcggta
ggtcgtatgaagttcaaccgttctttagatattcctgaaggcgtaggcacaggtatctta
agcaacgacgacatcattggtgtaatgaagaaattgatcgaaatccgtaacggtcgtggt
gaagtcgatgatattgaccacttaggtaaccgtcgtatccgctcagtgggcgagatggcg
gaaaaccaattccgtatcggtttagtgcgtgttgaacgtgcggtgcgtgagcgtctttca
ttaggcgatttagatggcgtgaccccacaagatttaatcaatgcgaaaccaatttctgcg
gcagtgaaagagttcttcggttcatcacaactttcgcaatttatggaccaaaacaacccg
ctttcagaagtcacccacaaacgtcgtatttcagcgttaggtccaggcggtttaactcgt
gaacgtgcaggcttcgaagtgcgtgacgtacacaccactcactatggtcgcttatgtccg
atcgaaacccctgagggtccaaacatcggtttgattaactcgctttctgtgtatgcgcgt
accaacaactacggcttcttagaaacaccattccgtaaagttgtgaatggtcaagtgact
gaagagatcgaatacttatcagcgattgaagaaggtgcttacgttatcgcacaggcgaac
tcaaacttagatgagaacttccgctttactgatacttatgtaacctgtcgtggtgaacac
ggtgagtcaggtttatatcgcccagaagaaattcactatatggacgtttcaacgcaacaa
gtggtttctgtggcggcagcattaattccgttccttgaacacgacgatgcgaaccgtgcg
ttaatgggtgcaaacatgcaacgtcaagcagtgccaacattgcgtgcggacaaaccatta
gtcggtacaggtatggaaaaaccaatcgcccttgactctggtgttgcggtgattgcaaaa
cgtggcggtactatccaatacgttgatgcttctcgtatcgtggtgaaagtcaatgaagat
gaaaccgttgcaggtgaagcaggtattgatatttataacttaatcaaatatacccgttca
aaccaaaatacttgtatcaaccaaattccttgtgtgaaattaggtgagccagtaggtcgt
ggtgaaatcttagctgatggcccttcaacggatttaggtgagttggcgttaggtcaaaat
atccgtgtggcatttatgccttggaacggctataacttcgaagactcaatgttagtatct
gaacgtgtagtacaagaagatcgctttaccacaatccacattcaagagttatcttgtgtg
gcgcgtgataccaaacttggtgcagaagagatcactgcagatattccaaacgtaggtgag
tcagcattaagcaaactggacgaatctggtatcgtgtatatcggtgctgaggtgaaaggt
ggcgatattcttgtgggtaaagtgacaccaaaaggtgaaacccaattaaccccagaagaa
aaattactccgtgcgatcttcggtgaaaaagcatcagacgttaaagatagttcacttcgt
gtgccaaacggtacatcaggtacggttatcgatgttcaagtcttcactcgtgatggcgta
gaaaaagataaacgtgcgttagaaatcgaagaaatgcaacttcgtgaagcgaaaaaagat
ttaaccgaagagttagaaattttagaagctggtttattcactcgtgttcgcaacttatta
gtagaaggtggcataagcgaagcagaattagataaagtggctcgtgagaaatggttagag
caaactttagaagatgaagcaaaacaaaatcagttagaacagcttgctgaacaacacgaa
gagttacgcaaagagttcgaacgtaaacttgagatcaaacgtaacaagatcattcaaggg
gacgatttagcaccgggcgtattaaaagtagttaaagtttaccttgcggtgaaacgtcaa
atccaaccaggggataaaatggcgggtcgtcacggtaacaaaggggttatctcgaaaatt
aacccagttgaagatatgccgtacgatgaaaacggtcagccggttgaaatcgtgttgaac
ccactgggcgttccttcacgtatgaatatcggtcagatcttagaaacacacttaggttta
gcggcacgtggtattggtgatcaaatcaacgcaatgattaaacagcaacaatctgttgcg
aaattacgtgaatatatccaaaaagcgtatgatttaggtcatggttcacaatctgtagat
ttaagcactttctctgatgaagaagtgatgcgtttagcgcaaaacttacgtaaaggttta
ccgcttgcaacaccagtatttgatggtgcgcacgaaagcgaaatcaaaggcttattagaa
ttaggtggtttaccaacatcaggtcaaattaccttatatgatggacgtaccggtgagaga
tttgagcgtccggtaaccgtaggttatatgtatatgctcaaattgaaccacttagttgat
gacaaaatgcacgctcgttcaacaggttcttatagtcttgttactcaacaaccgttgggt
ggtaaagcgcagttcggtggtcagcgtttcggtgagatggaggtatgggcattagaagca
tacggtgcggcttatacattacaagaaatgcttaccgtgaaatcggatgacgtaaacggt
cgtacgaagatgtataaaaacatcgtagatggtacgcactatatggaaccgggtattcca
gagtcattcaacgtaatcacgaaagaaatccgtgcattagcgattgatatggagttggac
gaagcctaa
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