KEGG   Glaesserella parasuis SH03: JL26_08895
Entry
JL26_08895        CDS       T03301                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
hpas  Glaesserella parasuis SH03
Pathway
hpas03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hpas00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JL26_08895 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpas03021]
    JL26_08895 (rpoB)
   03400 DNA repair and recombination proteins [BR:hpas03400]
    JL26_08895 (rpoB)
Enzymes [BR:hpas01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JL26_08895 (rpoB)
Transcription machinery [BR:hpas03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JL26_08895 (rpoB)
DNA repair and recombination proteins [BR:hpas03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JL26_08895 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 SPG4 RelB
Other DBs
NCBI-ProteinID: AIK17868
LinkDB
Position
complement(1732689..1736717)
AA seq 1342 aa
MAYSYSEKKRIRKSFGKRSQVLNVPYLLTIQLDSFDKFIQRDPEGLQGLEAAFRSVFPIV
SSNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHASGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILNMFFETVTFHIEDNKLLMT
LVPEHLRGETAAFDIEANGKVYVESGRRITARHIRALEKDNITQIQVPTEYIVGRVTAKD
YVDLSTGEIVCPANSEIGLETLAALAQAGYNEIEVLFTNDLDYGPYISETLRIDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSTDRYDLSAVGRMKFNRSLDIPEGVGTGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVT
EEIEYLSAIEEGAYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYRPEEIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVIAK
RGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPCVKLGEPVGR
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKD
LTEELEILEAGLFTRVRNLLVEGGISEAELDKVAREKWLEQTLEDEAKQNQLEQLAEQHE
ELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAARGIGDQINAMIKQQQSVA
KLREYIQKAYDLGHGSQSVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLE
LGGLPTSGQITLYDGRTGERFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIP
ESFNVITKEIRALAIDMELDEA
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggcatactcatattccgagaaaaagcgtattcgtaagagctttggcaaacgctcacaa
gttctgaacgtaccttatctattaacaattcagctcgattcttttgataaatttatccaa
agagatcctgaaggacttcaaggtttagaagcggcattccgttcagtgtttccgattgtg
agcagcaacggtgcaactgaattacaatacgtttcttacgaattaggcgaacccgtattt
gatgtgcgtgaatgccaaattcgtggtacaacctatgcagcgcctttacgcgtaaaactt
cgtcttgtgacctttgatcgcgaagcggcagcaggcacagtaaaagacatcaaagaacaa
aacgtctatatgggcgaaatcccattgatgaccgacaacggtactttcgtgatcaacggt
actgagcgtgttatcgtttctcagttacaccgtagtccgggtgtattcttcgattctgac
aaaggtaaaacccacgcttcaggtaaagtgctttataacgcacgcatcattccttaccgt
ggttcttggttagatttcgagttcgatccgaaagacaacctgtatgcgcgtatcgaccgt
cgtcgtaaattaccagcaaccattattctgcgtgcgttaggatacacgactgaagaaatc
ttaaatatgttcttcgaaaccgtgactttccacattgaagacaacaaattgctaatgacc
ttagtgcctgagcatcttcgtggtgaaacggcagctttcgacattgaagcaaacggcaaa
gtctatgttgaaagtggtcgtcgtatcaccgctcgtcacattcgtgcattagaaaaagac
aatattacccaaatccaagtgccgactgaatatattgtcggtcgtgtgacagcgaaagat
tatgttgatctttcaacaggtgaaattgtttgcccagcaaacagcgagatcggtttagaa
acccttgcagcattagcacaagcaggttacaacgagatcgaagtattatttactaacgat
cttgattacggtccgtacatttctgaaaccttgcgtatcgatccaacttacgaccgttta
agtgcgttagtggaaatctatcgtatgatgcgtccaggtgagccaccaacaaaagaagcg
gctgaagcattatttgacaatatgttcttctcaaccgaccgctatgatctttctgcggta
ggtcgtatgaagttcaaccgttctttagatattcctgaaggcgtaggcacaggtatctta
agcaacgacgacatcattggtgtaatgaagaaattgatcgaaatccgtaacggtcgtggt
gaagtcgatgatattgaccacttaggtaaccgtcgtatccgctcagtgggcgagatggcg
gaaaaccaattccgtatcggtttagtgcgtgttgaacgtgcggtgcgtgagcgtctttca
ttaggcgatttagatggcgtgaccccacaagatttaatcaatgcgaaaccaatttctgcg
gcagtgaaagagttcttcggttcatcacaactttcgcaatttatggaccaaaacaacccg
ctttcagaagtcacccacaaacgtcgtatttcagcgttaggtccaggcggtttaactcgt
gaacgtgcaggcttcgaagtgcgtgacgtacacaccactcactatggtcgcttatgtccg
atcgaaacccctgagggtccaaacatcggtttgattaactcgctttctgtgtatgcgcgt
accaacaactacggcttcttagaaacaccattccgtaaagttgtgaatggtcaagtgact
gaagagatcgaatacttatcagcgattgaagaaggtgcttacgttatcgcacaggcgaac
tcaaacttagatgagaacttccgctttactgatacttatgtaacctgtcgtggtgaacac
ggtgagtcaggtttatatcgcccagaagaaattcactatatggacgtttcaacgcaacaa
gtggtttctgtggcggcagcattaattccgttccttgaacacgacgatgcgaaccgtgcg
ttaatgggtgcaaacatgcaacgtcaagcagtgccaacattgcgtgcggacaaaccatta
gtcggtacaggtatggaaaaaccaatcgcccttgactctggtgttgcggtgattgcaaaa
cgtggcggtactatccaatacgttgatgcttctcgtatcgtggtgaaagtcaatgaagat
gaaaccgttgcaggtgaagcaggtattgatatttataacttaatcaaatatacccgttca
aaccaaaatacttgtatcaaccaaattccttgtgtgaaattaggtgagccagtaggtcgt
ggtgaaatcttagctgatggcccttcaacggatttaggtgagttggcgttaggtcaaaat
atccgtgtggcatttatgccttggaacggctataacttcgaagactcaatgttagtatct
gaacgtgtagtacaagaagatcgctttaccacaatccacattcaagagttatcttgtgtg
gcgcgtgataccaaacttggtgcagaagagatcactgcagatattccaaacgtaggtgag
tcagcattaagcaaactggacgaatctggtatcgtgtatatcggtgctgaggtgaaaggt
ggcgatattcttgtgggtaaagtgacaccaaaaggtgaaacccaattaaccccagaagaa
aaattactccgtgcgatcttcggtgaaaaagcatcagacgttaaagatagttcacttcgt
gtgccaaacggtacatcaggtacggttatcgatgttcaagtcttcactcgtgatggcgta
gaaaaagataaacgtgcgttagaaatcgaagaaatgcaacttcgtgaagcgaaaaaagat
ttaaccgaagagttagaaattttagaagctggtttattcactcgtgttcgcaacttatta
gtagaaggtggcataagcgaagcagaattagataaagtggctcgtgagaaatggttagag
caaactttagaagatgaagcaaaacaaaatcagttagaacagcttgctgaacaacacgaa
gagttacgcaaagagttcgaacgtaaacttgagatcaaacgtaacaagatcattcaaggg
gacgatttagcaccgggcgtattaaaagtagttaaagtttaccttgcggtgaaacgtcaa
atccaaccaggggataaaatggcgggtcgtcacggtaacaaaggggttatctcgaaaatt
aacccagttgaagatatgccgtacgatgaaaacggtcagccggttgaaatcgtgttgaac
ccactgggcgttccttcacgtatgaatatcggtcagatcttagaaacacacttaggttta
gcggcacgtggtattggtgatcaaatcaacgcaatgattaaacagcaacaatctgttgcg
aaattacgtgaatatatccaaaaagcgtatgatttaggtcatggttcacaatctgtagat
ttaagcactttctctgatgaagaagtgatgcgtttagcgcaaaacttacgtaaaggttta
ccgcttgcaacaccagtatttgatggtgcgcacgaaagcgaaatcaaaggcttattagaa
ttaggtggtttaccaacatcaggtcaaattaccttatatgatggacgtaccggtgagaga
tttgagcgtccggtaaccgtaggttatatgtatatgctcaaattgaaccacttagttgat
gacaaaatgcacgctcgttcaacaggttcttatagtcttgttactcaacaaccgttgggt
ggtaaagcgcagttcggtggtcagcgtttcggtgagatggaggtatgggcattagaagca
tacggtgcggcttatacattacaagaaatgcttaccgtgaaatcggatgacgtaaacggt
cgtacgaagatgtataaaaacatcgtagatggtacgcactatatggaaccgggtattcca
gagtcattcaacgtaatcacgaaagaaatccgtgcattagcgattgatatggagttggac
gaagcctaa

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