KEGG   Helicobacter pylori India7: HPIN_06305
Entry
HPIN_06305        CDS       T01918                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
  KO
K13797  DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
Organism
hpn  Helicobacter pylori India7
Pathway
hpn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hpn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HPIN_06305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpn03021]
    HPIN_06305
   03400 DNA repair and recombination proteins [BR:hpn03400]
    HPIN_06305
Enzymes [BR:hpn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HPIN_06305
Transcription machinery [BR:hpn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HPIN_06305
DNA repair and recombination proteins [BR:hpn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HPIN_06305
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb1_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb1_4 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: ADU80455
UniProt: E8QHJ3
LinkDB
Position
complement(1275949..1284621)
AA seq 2890 aa
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVRETMERGITYSIPLKIRVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRISSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIARMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLESCSDEE
LLDYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKVHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGAKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGQAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMTAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGEQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGTIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVGANSLISNPTTNALSTIATWDPYNTPIIADFKGRVSFMDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEVRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRALEDNSKF
NT seq 8673 nt   +upstreamnt  +downstreamnt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgcgggttgcgaatttggcaagtctaaatac
accgttagagaaacgatggagaggggcattacctactctattccgcttaaaattagagtg
cgcttgattttgtgggaaaaagataccaaaagcggcgaaaagaacggcatcaaagatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatt
atcaatggggtggagcgcgtggtggtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttatatgctcgtatc
aataaacgccgtaaagtgcctgttaccattttattcagggcaatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcctcattagacgccaatcaaagaatggaatttgacttgaaagatcctcag
ggcaagatcattcttttagcgggtaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgccatttagct
gagcctgttatggtggggaaagaagtcttattagacatgctcactcagctagataaaaac
aaattggaaaaaatccacgatttaggcgtgcaagaatttgtgatcattaacgatctagcg
ttagggcatgacgcttccattatccattcttttttggccgattctgagtctttgaaatta
ctcaagcaaaccgaaaaaattgatgatgaaaacgctctggcggcgattcgtatccataag
gttatgaaaccaggcgatcccgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtgggccgcatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgacagagaccacttg
ggcaatcgtaggatcagggcggtaggggaattattggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaaactcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaatttatggatcaaacgaaccccttgagtgaggttacgcac
aaacgccgcctttcagcactcggtgaaggggggttggtgaaagacagggtagggtttgaa
gccagagatgtgcaccccacgcattatggccgaatttgtcccattgagaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacaagagtgaatgatttaggtttt
attgaagccccttataaaaaggttgtggatggcaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggagggcgagatcgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagttctagcatgctagtgggggtagccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgccttaatggggactaacatgcag
cgccaagcggtacccttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgtgcaggcgttgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtgggagccgggcaaatcatcgctgatggccctagcatggat
agaggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaacggctat
aactttgaagacgcgatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggatgctagggagcttaagcatggcgtggaagaattt
accgctgacattcctgatgtgaaagaagaagcgctcgcgcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgccccccaagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaagacgcgcgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcattagctcactcctttctcaagcgattttagaagagcctttcagccat
aacggcaaggattataaagagggcgatcaaatccctaaagaagaaatcgcttccatcaac
cgcttcactttggctagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagtcttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttggaaagcaaatcgctcgcatgcta
gaggataaaaccaaagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccctttgacaatccatgtgcttgagagttgttctgatgaagag
cttttggactacgcaaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagctaagatcgctatggatggc
aaaatggatctgtatgatgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcacg
ggcccttatagcttggtaacgcaccagcctgtggggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcactagaagcttatggcgcagcgcacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagtgaaatccctgagactttctatgtcttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
ctcactctagccagccctgaaaaagtccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattaccgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggtacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatctggtatgtcaattccttg
cctagtcgtatcggcacgcttttgggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcgctaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttgtggcgcaaatgggcggccaagcgatcaaggatttgctagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggc
aacaggcctgaatggatgatgctcacggttttaccggtattaccgccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcttaatggagcttggggcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgt
agcaccaatgcggttaaaggggctaacaagcgccctttaaaatcgctcagtgaaatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaatcttaaaatggatgaatgcggattgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagagaggctatgct
accacgctcaaacaagctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatcccaagctgattgacggcaaagcgatccagttgcacccg
ttagtgtgctcagcgtttaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttacccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgatcattaagtctattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggcattaccgcaacctttttggataatttg
aaaacgcttggcttcaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggttgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgaccgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagtggcgcaaggggtagcgcggcg
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccggacggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacagcgctaaaaacagccaatgcggggtat
ttgacaagaaagctcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcctattacgaatgaa
atcttgctttatgcggacactttgattgatgaagaaggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctacggcttgaatttaggcgaaggcaagatgagttatccaggtgaagcggtg
ggcgtggtagccgcgcaatctatcggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgtgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttacacgaataaggagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgag
caagaagctaaatttgttttaagaagaagcgatattgtcaagccaagcgaattggccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aaggggggaagtatcgccgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgttagtcaaggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggcacaatcaaatactatgtgttagaggccaatcatttagagcgcacccatggg
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgacgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgggtgctaacagccttatttctaatcctactacaaatgcgttaagcacgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtagggtgagtttt
atggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcaca
agcttagtggtgaatgattatattccaagcggatacaaaccaagcttgtttttagagggg
gctaatggcgaagaggtgcgttatttcttagagccaaaaacttctatcgccattagcgat
ggctctagcgtggagcaggctgaagtgttagccaagatccctaaagcgaccgttaaatct
agggatattaccgggggtctcccaagggtttctgaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagttgatgggattgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattatttcgtg
gataaaggcaagcaaattttagtgcatgctgatgaatttgtgcatgcgggagaagcgatg
acggatggggtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtgagcattgcggac
aagcacattgaaatcattgtgtctcaaatgctaaggcaagtgcgtattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgagccggtgcttttagggatcacc
agagcggctattgggagcgatagcatcatttcagcggcctcttttcaagaaacgactaaa
gttttaacagaagccagtatcgccatgaaaaaagactttttggaagacttgaaagaaaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataaaaataaaaaaatcgtg
ctgagagcgcttgaggataactctaaattttga

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