Helicobacter pylori 35A: HMPREF4655_20339
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Entry
HMPREF4655_20339 CDS
T01892
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpo
Helicobacter pylori 35A
Brite
KEGG Orthology (KO) [BR:
hpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpo03032
]
HMPREF4655_20339 (topA)
03400 DNA repair and recombination proteins [BR:
hpo03400
]
HMPREF4655_20339 (topA)
Enzymes [BR:
hpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HMPREF4655_20339 (topA)
DNA replication proteins [BR:
hpo03032
]
Prokaryotic type
DNA Topoisomerases
HMPREF4655_20339 (topA)
DNA repair and recombination proteins [BR:
hpo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMPREF4655_20339 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
DUF1272
Zn-ribbon_8
LysW-like_globular
Motif
Other DBs
NCBI-ProteinID:
ADU40484
LinkDB
All DBs
Position
complement(328197..330407)
Genome browser
AA seq
736 aa
AA seq
DB search
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDH
KELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILN
ALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDKER
EIKAFKPLTYFTLDAYFESHLEAQLISYKGNKLKAQELIDGKKAQEIKNELEKESYTISS
IIKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRT
DSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIVLEPNALK
DYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQV
LKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKY
VKQTENANDGSKQESCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNANEIIEG
VKCPECGGDIALKKSRKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERIYRKKKAH
ECIQCKERVFLEEDDG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccttattatcgtagaatcccccgcaaaagccaaaaccattaaaaattttttg
gataaaaattatgaagtcatcgcctctaaagggcatgttagggatttatccaaattcgct
ttaggcattaagattgatgaaacaggcttcactcctaattatgtcgtggataaagatcat
aaagagcttgtcaaacagatcatagagctttctaaaaaggcatctaccacctacatcgct
accgatgaagacagagaaggggaagcgataggctatcatgtggcgtgcttgattgggggg
aaattagagagctatcctaggattgtttttcatgagatcacgcaaaatgcgattttaaac
gctctaaaaaccccacgacaaattgacatgtcaaaagtcaatgcccaacaagccagacgc
tttttggatcggatcgtggggtttaagctcagctcgttgatttcatcaaaaatcactaaa
ggtttgagcgctgggcgggtgcaaagcgcagctttaaagcttgtgattgacaaagagaga
gagatcaaagcctttaagcctttaacctacttcacgctagacgcttattttgagtcgcat
ttagaagcgcaactcattagctataagggcaacaaactcaaagcccaagagcttattgat
ggaaaaaaagctcaagagattaaaaacgaattagaaaaagaaagctacactatttctagt
attattaaaaaatctaaaaaatcccccacaccgccccctttcatgacttctactttacag
caaagtgcttccagtcttttaggcttttcgcccacaaaaaccatgagtatcgctcaaaaa
ttgtatgaaggcgtagccaccccgcaaggggttatgggggtgatcacttacatgaggacc
gatagcttgaatatcgctaaagaagctttagaagaagcgaggaataagattttaaaagac
tatggcaaagactacttaccccctaaagccaaagtctattccagcaagaataaaaacgcc
caagaagcccatgaagcgatcagacccacttctattgttttagagccaaacgctttaaaa
gactaccttaagcctgaagaattaaagctctataccttaatttacaaacgcttcttagct
tctcaaatgcaagacgctctttttgaaagccaaagcgtggttgtggcttgcgaaaaaggc
gagtttaaagccagtggcagaaaactcctttttgatggctattataaaattttaggcaat
gacgataaggacaaattgctccccaatttgaaagaaaacgaccccattaaattagaaaaa
ctagagagcaacgcccatgttacagaacctccagcacgctattcagaagcgagcttgatt
aaagttttagaaagtttaggcataggcaggcccagcacctacgccccaacgatttccctc
ttacaaaacagagactatatcaaggtagaaaaaaagcaaatcagcgctttagagagcgct
tttaaggtgatagaaattttagaaaagcattttgaagaaatcgtggattccaaattcagc
gcttctttagaagaggaactggacaatatcgctcaaaataaagccgactatcagcaagtc
ttaaaggacttttactacccttttatggataaaattgaagctgggaaaaagaatatcatc
tctcaaaaagtgcatgaaaaaaccggccaatcatgccctaaatgcggtggggaattggtc
aaaaaaaatagccgttatggggagtttatcgcttgcaacaattaccctaaatgcaaatat
gtcaaacaaactgaaaacgctaatgatggatctaagcaagaatcgtgcgaaaaatgcgga
ggggaaatggtgcaaaaattcagcagaaacggagcgtttttagcttgcaacaactaccct
gaatgcaaaaacaccaaatcactaaaaaacacccctaacgcaaacgaaataatagaaggc
gtgaaatgcccagaatgcgggggggatattgccttaaaaaagagcagaaaaggctcgttt
tatggctgtaacaattaccctaaatgcaattttttatccaaccataagcccattaataag
cgttgtgaaaaatgccattatttaatgagtgaaagaatctatcgcaaaaaaaaggcgcat
gaatgcatccaatgcaaagagcgcgtgtttttagaggaagatgatggctaa
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