Helicobacter pylori P12: HPP12_1543
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Entry
HPP12_1543 CDS
T00786
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpp
Helicobacter pylori P12
Pathway
hpp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPP12_1543 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpp03400
]
HPP12_1543 (mfd)
Enzymes [BR:
hpp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPP12_1543 (mfd)
DNA repair and recombination proteins [BR:
hpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPP12_1543 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACJ08689
UniProt:
B6JP61
LinkDB
All DBs
Position
1638417..1641416
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESKLAKEVISYFKPNIKAVLFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLDEPSYKDLKAKVEQSPLNSFSKDLTSFGLWFLGEKAQDLLSVYK
SVISPRALEEIQELASLNELDYERFKLLKVLENAQGYEDLEIHAHALEGFIALHSNHKIT
LLAPNKTILDNVISALERSNIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPAKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEGLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCEDVDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TLTYNDEHKESLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattaccaaatactcgct
tgtaaggattttaaagaatccaagctcgctaaagaagtcataagctattttaagccaaat
attaaagccgttcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaggccttagaaaac
aagcaagaaactatcatcattgcccctattagcgctttattgcaccctttacccaaaaaa
gaacttttagagagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggctatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagc
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctt
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttggacgaaccatct
tataaggatctgaaagcaaaagtggaacaaagccccttaaatagcttttctaaagatttg
accagttttggtttgtggtttttaggagaaaaagcacaagacttgctaagcgtttataaa
agcgttataagccctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gattatgagcgtttcaaattgttaaaggttttagaaaacgcacaaggttatgaagattta
gaaatccatgcgcatgccctagaaggctttatcgctttgcattcaaatcataaaatcacg
ctcctagcccccaataaaacgattttagacaatgtgataagcgcgcttgaaagaagcaat
attgaatgcgtcatcgccccctttgtgttaaattttaaaacccctgatgggatttttatc
tcgctcaattcctttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaacgaa
ttgaatccgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcacagcgttttagggagtaagagggattttttagaaatcgcttatttaggcgaa
gacaaactgctattgccggtagaaaatttacatctcatcgctcgctatgtggcgcaaagc
gatagcgtgccagctaaagaccggctagggaaagggagttttctcaaactaaaagctaaa
gtcaggactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcagagttggaagtctttaaatcgcat
gcggggtttgaatacaccagcgatcaagaaaaagccatcgctgaaatttcaaaggattta
agctctaagagagtgatggacaggttattgagtggggatgtgggttttgggaaaacagaa
gtagcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagttgtg
cctaccactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaagcc
gtagaattagggttaattgatgtgcttgtaggcacgcatgcgattttgggtgcgaaattt
aagaacctgggcttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatccca
cgcactttaaacatggcgctctctcaaattaaaggcattagttctttaaaaaccccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaaggtttaatccctaaactcaaaatcgctatt
ttgcattcccagattaacgctaacgagagcgaagaaatcatgctagagtttgctaagggg
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaatttcgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggtaaaaaagaaggcttttgttatttcctcatagaagatcaaaaa
agtttgaatgaacaggctttaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agtggggagagtatcgcctatcatgatttagaaatcagggggggcgggaatttgcttggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgaa
gacgctatttatgaattgagtggggggaagaaaaggcttgaaaagagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggctggat
ttataccgccgtttgagtttgtgtgaggatgtagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaatcttagccaatcagcttggcatcattaaactttctaatttcaatcaaaacatc
acccttacttataacgatgaacataaagaaagcttgaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaaacggcgttaa
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