KEGG   Helicobacter pylori Shi470: HPSH_06465
Entry
HPSH_06465        CDS       T00742                                 
Name
(GenBank) 3'-5' exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hps  Helicobacter pylori Shi470
Pathway
hps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPSH_06465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hps03019]
    HPSH_06465
   03016 Transfer RNA biogenesis [BR:hps03016]
    HPSH_06465
Enzymes [BR:hps01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HPSH_06465
Messenger RNA biogenesis [BR:hps03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPSH_06465
Transfer RNA biogenesis [BR:hps03016]
 Prokaryotic type
  tRNA degradation factors
   HPSH_06465
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: ACD48695
LinkDB
Position
complement(1272341..1274275)
AA seq 644 aa
MQGFLRSLFFGVKKIPKPFAPLIEKGVLKEALGCNKERYFLKEGFDIGRIEWAENKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCKIECSKKRPIAFFKAALLNADHTIIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLDLAQHYAQLKASDFKNRINYSHLPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDDLENARLFQGVIEVRANCTYEEINHFLTTQQSSLDNDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETQTESNAHTLIEGAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLEQQKRLYDKLFDYEIMRPKNMGFFPFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPMQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKTALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKELIG
LKVLVKTNKVFKSLEKVRVKITHADLVLGQVWGEITERIKEHVS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctaatagaaaagggcgttttaaaagaagcgcttggatgcaacaaggaacgctatttt
ttaaaagaaggctttgatataggcagaattgagtgggcagaaaataaggcgtttttcatt
tctttagcgaaaaattaccccaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgcaaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgcgcttttaaatgcagatcacacgataatagcttacctggctaaaaaaaatcac
cagattgtggctatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaagatccttattagaattgcccaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttggatttagcccaacattat
gcgcaacttaaagcgagcgattttaaaaataggatcaattattctcacctcccttttatc
accattgatcctaaagacgctaaggattttgacgatgcgattttttatgatcaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctagggttaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagtttgtctcaaggggcatgctcactaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagatgatttggaaaacgcccgattgtttcaaggagttatt
gaagttagggctaattgcacctatgaagaaatcaaccattttttaaccacccaacaaagc
tcgttagataacgacttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcgtttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacgcaaacagaaagcaacgcgcacaccctt
atagaaggagccatgttattagccaaccaatctagcgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccaagtttggagcagcaaaaacgcctc
tacgacaagctttttgattatgagatcatgcgccctaaaaacatgggctttttccctttt
ttagagcatgccttaaagatagccaaagaaaagaagttagaaagagaagtttcgcgcttg
atcattaaatctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttgccagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgtttcatcaagctaaaggctgctcgtatttgttagaa
gaaacgcctgaattatgcgctgagttgaacgctttacaaaaaaagaccgctttgattgaa
agggattttgtcaaacgcaaattcgcccgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggctaaaagaattaataggg
cttaaagttttagtcaaaacgaataaggtttttaagtctttagaaaaggtgcgcgttaaa
atcacgcatgcggatttggttttagggcaagtttggggtgaaatcacagaaaggattaaa
gagcatgtatcgtaa

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