Helicobacter pylori Shi470: HPSH_06465
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Entry
HPSH_06465 CDS
T00742
Name
(GenBank) 3'-5' exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hps
Helicobacter pylori Shi470
Pathway
hps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSH_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hps03019
]
HPSH_06465
03016 Transfer RNA biogenesis [BR:
hps03016
]
HPSH_06465
Enzymes [BR:
hps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPSH_06465
Messenger RNA biogenesis [BR:
hps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPSH_06465
Transfer RNA biogenesis [BR:
hps03016
]
Prokaryotic type
tRNA degradation factors
HPSH_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ACD48695
LinkDB
All DBs
Position
complement(1272341..1274275)
Genome browser
AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKPFAPLIEKGVLKEALGCNKERYFLKEGFDIGRIEWAENKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCKIECSKKRPIAFFKAALLNADHTIIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLDLAQHYAQLKASDFKNRINYSHLPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDDLENARLFQGVIEVRANCTYEEINHFLTTQQSSLDNDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETQTESNAHTLIEGAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLEQQKRLYDKLFDYEIMRPKNMGFFPFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPMQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKTALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKELIG
LKVLVKTNKVFKSLEKVRVKITHADLVLGQVWGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctaatagaaaagggcgttttaaaagaagcgcttggatgcaacaaggaacgctatttt
ttaaaagaaggctttgatataggcagaattgagtgggcagaaaataaggcgtttttcatt
tctttagcgaaaaattaccccaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgcaaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgcgcttttaaatgcagatcacacgataatagcttacctggctaaaaaaaatcac
cagattgtggctatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaagatccttattagaattgcccaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttggatttagcccaacattat
gcgcaacttaaagcgagcgattttaaaaataggatcaattattctcacctcccttttatc
accattgatcctaaagacgctaaggattttgacgatgcgattttttatgatcaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctagggttaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagtttgtctcaaggggcatgctcactaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagatgatttggaaaacgcccgattgtttcaaggagttatt
gaagttagggctaattgcacctatgaagaaatcaaccattttttaaccacccaacaaagc
tcgttagataacgacttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcgtttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacgcaaacagaaagcaacgcgcacaccctt
atagaaggagccatgttattagccaaccaatctagcgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccaagtttggagcagcaaaaacgcctc
tacgacaagctttttgattatgagatcatgcgccctaaaaacatgggctttttccctttt
ttagagcatgccttaaagatagccaaagaaaagaagttagaaagagaagtttcgcgcttg
atcattaaatctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttgccagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgtttcatcaagctaaaggctgctcgtatttgttagaa
gaaacgcctgaattatgcgctgagttgaacgctttacaaaaaaagaccgctttgattgaa
agggattttgtcaaacgcaaattcgcccgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggctaaaagaattaataggg
cttaaagttttagtcaaaacgaataaggtttttaagtctttagaaaaggtgcgcgttaaa
atcacgcatgcggatttggttttagggcaagtttggggtgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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