Herbaspirillum rubrisubalbicans: Hrubri_2042
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Entry
Hrubri_2042 CDS
T04238
Symbol
dapE
Name
(GenBank) succinyl-diaminopimelate desuccinylase protein
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb00300
Lysine biosynthesis
hrb01100
Metabolic pathways
hrb01120
Microbial metabolism in diverse environments
hrb01230
Biosynthesis of amino acids
Module
hrb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Hrubri_2042 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hrb01002
]
Hrubri_2042 (dapE)
Enzymes [BR:
hrb01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
Hrubri_2042 (dapE)
Peptidases and inhibitors [BR:
hrb01002
]
Metallo peptidases
Family M20
Hrubri_2042 (dapE)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
Motif
Other DBs
NCBI-ProteinID:
ALU89233
UniProt:
A0A0U3K3S7
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Position
complement(2334764..2335897)
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AA seq
377 aa
AA seq
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MIMSKTLALTQELMSLSSVTPEDKGCQARLAELLTPLGFVCETIQSGEVTNLWARKGTAQ
PLVVFAGHTDVVPTGPLEKWQSHPFQPTLRDGRLYGRGASDMKTSIAAMVVACEEFTAAH
PEHKGSIGFLITSDEEGPATDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIKNGRR
GTMSGKLTVKGIQGHIAYPQLARNPIHQAAPALAELVAEQWDAGNEYYLPTSWQISNIHG
GTGASNVIPGEVVIDFNFRFSTASTVEGLQQRVHAILDKHGLEYDLKWTVGGLPFLTPRG
DLSDALSKAIKDETGLETELSTTGGTSDGRFIAQICPQVIEFGPPNDSIHKINEHIEVRY
IDPLKNIYRKTLENLLT
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgatcatgagcaagacgctggccctgacccaggaattgatgtccctttcttccgtcacc
cccgaagacaaaggctgccaggccaggctggcggaattgctcacgccgctgggcttcgtc
tgcgagactatccagtcgggcgaggtcaccaacctgtgggcgcgcaagggcacagcccag
ccgctggtggtcttcgccggccacaccgacgtggtgccgaccggcccgctggagaagtgg
cagtcgcatcccttccagccgaccctgcgcgatggccgcctgtacggtcgcggcgcctcc
gacatgaagacctcgatcgccgccatggtggtggcttgcgaagagttcacggcggcccat
cccgaacacaagggttcgatcggcttcctcatcaccagcgatgaagaaggcccggccacc
gatggcaccgtggtggtctgcaatgccttgaaggcacgcggcgagcagctggattactgc
atcgtcggcgagccgacttcggccaagaccctgggcgacatgatcaagaacggccgccgt
ggcaccatgtcgggcaagctgaccgtcaagggcatccagggccacatcgcctatccgcaa
ctggcgcgcaaccccatccaccaagccgcaccggcactggccgaactggtggccgaacag
tgggatgcgggcaatgaatactacctgccgacgtcctggcagatttccaacatccatggc
ggtaccggcgcatccaacgtgatcccgggtgaagtcgtgatcgacttcaacttccgcttc
tccaccgccagcaccgtggaaggcctgcagcagcgcgtacacgccatcctcgacaagcat
ggcctggaatacgacctgaagtggaccgtcggcggcctgcccttcctgaccccgcgcggc
gacctctcggatgcgctgtccaaggcgatcaaggacgagaccgggctggagaccgagctg
tcgaccaccggcggcacctcggacggacgcttcatcgcccagatctgcccccaagtgatc
gaattcggcccgcccaacgacagcatccacaagatcaatgagcacatcgaagtgcgttac
atcgatcccttgaagaacatctaccgcaagacgctggaaaacctgctgacctga
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