Helobdella robusta: HELRODRAFT_75449
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Entry
HELRODRAFT_75449 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hro
Helobdella robusta
Pathway
hro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HELRODRAFT_75449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hro03400
]
HELRODRAFT_75449
Enzymes [BR:
hro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HELRODRAFT_75449
DNA repair and recombination proteins [BR:
hro03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
HELRODRAFT_75449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
BRCT_2
BRCT
mRNA_cap_enzyme
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
20215151
NCBI-ProteinID:
XP_009014028
JGI:
Helro1_75449
UniProt:
T1G253
LinkDB
All DBs
Position
Unknown
AA seq
802 aa
AA seq
DB search
MAVSVSSKVSFYQFCLLLEKLSKLAAGDKKKKILITFIAEWRKFGLELKLKNVNNDDSFF
DAMRLLLPHLDRDRAAYGIKEYRLAQLFVNVFALNKNSLDGKSLINFKTTKQNKDVAVRD
FASLCGMVLKNRCSEKGVLSIAEVNKQLDAIARGHVIKDEDDVQKSLLHLMKNVSSCELE
WLVRIILKEVKLGLSQKLIFSSFHPDAEELYNVKMSLEKVCRMLTDENIRLHEIEVSIFT
AFKPMLAVREEPSNIEKLMHGRSFLIETKYDGERMQMHKMNDSFKYFSRGGIEYSHVYGE
DSNKGNLTKFISNRLESSVVSCILDGEMVGYDPVNRLIGTKGENIDIKSLHLTTYQPMYV
LFDVLLLNGRVLTNEPLKSRRQVLNNIIQPLPGRIMLSKAFEKSTKFEIISPLNEAIEYG
EEGIMLKDVESIYKPNCRQKGGWFKIKPDYIDGLMNDLDLVIIGAYFGNKSNLLTHFLMG
CVSLHGEKKNDGGGDDDGESDFEIHTFCKVGTGLTNIQLVELNFKLSKEWITFSKNNFPS
WLKLPSTFKQKPDVVIKDPKKSIVLQIKATDLIKSDQYQSKYTLRFPRVERIRYDKNCLQ
CLSLHQLNELIRKSKSMLVDGLVSVTYDVNCKSSNRASGEGLKKQRIRKNSREAVVSATG
SSSTLLDGKEICVMMNDGGWHNKEMSKSGIEKLLIEHGAQVVQNPDKRTTDFIIANDESI
LKVKNVVKLGHTDVVKLDWLLGSISQNELLPWKPFDLIHCCAKTRQKFADDYDGYGDEYF
CPTSPQQLKCLFDGIQLKDQVS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttctgtttcgtcaaaagtttctttctaccagttttgtttactgcttgaaaaa
cttagtaaattggccgcaggtgataaaaagaaaaaaattttaatcacatttattgctgaa
tggcgaaaattcggcttggaattgaagttaaaaaacgttaacaatgatgattcatttttt
gatgcaatgaggttgttgttacctcatttggacagggatagagctgcttatggcatcaaa
gagtacaggttggctcagctctttgttaatgtttttgctttaaataagaatagcctggat
ggcaagagtttgatcaattttaagactacaaaacagaacaaagatgtagcagtacgagat
tttgccagcctatgtggtatggttcttaagaacaggtgctctgaaaaaggcgtcctttct
attgcagaggtcaacaaacagttggatgcaattgcaaggggtcatgtgatcaaagatgaa
gatgatgttcaaaagtctttgctgcatttgatgaagaatgtttcaagttgtgagcttgag
tggttggttaggattattttgaaggaagtgaagttaggtttgagtcagaaattaatattt
agttctttccaccctgatgcagaagagttgtacaatgttaaaatgagtttagagaaggtt
tgcagaatgttgacagatgagaatatacgtctgcatgaaattgaagtctccatcttcact
gctttcaaacccatgctggctgtcagagaggaaccttcaaatatcgagaaattgatgcac
ggtcgatcgttccttattgagacgaagtacgatggcgagagaatgcagatgcacaaaatg
aacgattccttcaaatatttctccagaggaggcatcgaatacagccatgtttatggtgaa
gatagtaataagggcaacctgaccaaatttataagcaaccgattagaatcatccgttgtt
tcgtgcattctcgatggagagatggtcggttatgatcccgtcaaccgtctcattggcacg
aaaggagagaatattgacataaaatcattgcatctaacaacgtaccaaccgatgtacgtc
ctctttgatgtcctgctcctcaatgggagggttcttactaatgaacctttgaagagtagg
aggcaggttttaaacaacatcatccagccattgcctggcagaatcatgctttcaaaagct
tttgaaaaatctaccaagtttgaaattatttctcccttgaatgaagccatcgaatatggc
gaagaaggaatcatgttgaaggatgttgaaagcatctacaaaccgaactgcagacagaag
ggtggttggtttaaaatcaagcctgattacattgatggtctgatgaatgacctcgacctt
gtcatcattggtgcatattttgggaacaagtcaaacctattgactcactttttaatggga
tgtgtcagtctgcatggcgagaaaaagaatgatggtggtggtgatgatgatggcgagtct
gattttgaaattcatacgttttgtaaggttggaactggtttgactaacatccaacttgtt
gaattgaattttaaactatcaaaagaatggatcactttcagcaaaaataattttccatct
tggttgaaacttccgtccacatttaaacagaaaccagacgttgttatcaaagatcctaaa
aaatcgatagtcttgcagataaaagctacagacctgataaaatcagaccaataccaaagc
aaatacaccttaaggttcccaagggttgaaagaataagatatgacaaaaattgcttgcag
tgcctctccttgcatcaactcaatgaactcataaggaaatcgaaatcaatgttggtcgat
ggactggttagcgttacgtacgacgtcaactgcaaatcttcgaacagagcttctggcgag
gggttgaaaaaacaacggataaggaagaacagcagggaagcagttgtcagtgcaacaggg
tcgtcatcaaccttgctggatggaaaagaaatttgtgtaatgatgaatgacggcggctgg
cacaataaagaaatgagcaaatctggcattgagaagttgctcattgaacacggggcccaa
gttgttcagaaccccgataaacgaacaactgatttcattatagccaacgacgaatcgatc
ttgaaagttaaaaatgtagttaaactaggtcacacggatgttgttaaacttgattggttg
cttggttccatctctcaaaatgagttgttaccttggaaaccttttgatttaattcattgt
tgtgcaaagacaagacaaaagtttgcagatgattatgatggttatggggatgaatatttt
tgtccaacctctcctcaacagcttaagtgtttattcgacggcattcaactgaaagaccaa
gtaagctaa
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integrated database retrieval system
