KEGG   Homo sapiens (human): 27183Help
Entry
27183             CDS       T01001                                 

Gene name
VPS4A, SKD1, SKD1A, SKD2, VPS4, VPS4-1
Definition
(RefSeq) vacuolar protein sorting 4 homolog A
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
hsa  Homo sapiens (human)
Pathway
hsa04144  Endocytosis
hsa04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    27183 (VPS4A)
  09143 Cell growth and death
   04217 Necroptosis
    27183 (VPS4A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    27183 (VPS4A)
Membrane trafficking [BR:hsa04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    27183 (VPS4A)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 IstB_IS21 AAA_22 AAA_16 RuvB_N AAA_14 AAA_5 DUF815 AAA_18 AAA_2 AAA_33 RNA_helicase AAA_17 AAA_24 PhoH AAA_7 NACHT Mg_chelatase Sigma54_activat YhdB YCII AAA_30 Sigma54_activ_2 MCM
Motif
Other DBs
NCBI-GeneID: 27183
NCBI-ProteinID: NP_037377
OMIM: 609982
HGNC: 13488
Ensembl: ENSG00000132612
Vega: OTTHUMG00000175589
Pharos: Q9UN37(Tbio)
UniProt: Q9UN37 A0A024R705
LinkDB All DBs
Structure
PDB: 

Position
16q22.1
AA seq 437 aa AA seqDB search
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
VQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNA
DDLLKVKKFSEDFGQES
NT seq 1314 nt NT seq  +upstreamnt  +downstreamnt
atgacaacgtcaaccctccagaaagccattgatctggtgacgaaagccacagaggaggac
aaagccaagaactacgaggaggcgctgcggctgtaccagcatgcggtggagtacttcctc
cacgctatcaagtatgaggcccacagcgacaaggccaaggagagcattcgagccaagtgc
gtgcagtacctagaccgggccgagaagctgaaggattatttacgaagcaaagagaaacac
ggcaagaagccagtcaaagagaaccagagtgagggcaagggcagtgacagtgacagtgaa
ggggataatccggagaaaaagaaactgcaagaacagctgatgggtgccgtcgtgatggag
aagcccaacatacggtggaacgacgtggccgggctggagggggccaaggaggccctcaaa
gaagctgtcattttgccaatcaaattcccacacttgttcacaggcaagcgcaccccctgg
cgggggattctgctgttcggaccccctggcacagggaaatcctacctggccaaagccgtg
gcaacagaggccaacaactccaccttcttctctgtgtcctcctcagatctgatgtccaag
tggctgggggagagtgaaaagctggtcaagaacctgtttgagctggccaggcagcacaag
ccctccatcatcttcatcgatgaggtggattccctctgcgggtcccgaaatgaaaatgag
agtgaggccgcccggaggatcaaaacggagttcttggtccagatgcagggggtggggaat
aacaatgatgggactctggttcttggagccacaaacatcccatgggtgttggattcggcc
atcaggaggaggtttgaaaaacgaatttatatccccttgccggaggaagctgcccgcgcc
cagatgttccggttgcatctcgggagcactccccacaacctcacggatgcaaacatccac
gagctggcccggaagacggaaggctactcgggcgcggacatcagcatcatcgtgcgggac
tctctcatgcagcccgtgaggaaggtgcagtcggccacacacttcaaaaaggtctgtggc
ccctctcgcaccaaccccagcatgatgattgatgacctcctgactccatgctcaccaggg
gacccaggagccatggagatgacttggatggatgtccctggggacaaactcttagagcct
gtggtttgcatgtcggacatgctgcggtctctggccaccacccggcccacggtgaatgca
gacgacctcctgaaagtgaagaaattctcagaggactttgggcaagagagttaa

KEGG   Homo sapiens (human): 9525Help
Entry
9525              CDS       T01001                                 

Gene name
VPS4B, MIG1, SKD1, SKD1B, VPS4-2
Definition
(RefSeq) vacuolar protein sorting 4 homolog B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
hsa  Homo sapiens (human)
Pathway
hsa04144  Endocytosis
hsa04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    9525 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    9525 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    9525 (VPS4B)
Membrane trafficking [BR:hsa04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    9525 (VPS4B)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_22 IstB_IS21 AAA_16 RuvB_N AAA_14 AAA_5 AAA_2 AAA_18 DUF815 AAA_33 RNA_helicase AAA_24 PhoH AAA_7 AAA_17 Mg_chelatase NACHT Sigma54_activat TPR_1 MCM TPR_2
Motif
Other DBs
NCBI-GeneID: 9525
NCBI-ProteinID: NP_004860
OMIM: 609983
HGNC: 10895
Ensembl: ENSG00000119541
Vega: OTTHUMG00000132790
Pharos: O75351(Tbio)
UniProt: O75351 A0A024R2C5
LinkDB All DBs
Structure
PDB: 

Position
18q21.33
AA seq 444 aa AA seqDB search
MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq 1335 nt NT seq  +upstreamnt  +downstreamnt
atgtcatccacttcgcccaacctccagaaagcgatagatctggctagcaaagcagcgcaa
gaagacaaggctgggaactacgaagaagcccttcagctctatcagcatgctgtgcagtat
tttcttcatgtcgttaaatatgaagcacagggtgataaagccaagcaaagtatcagggca
aagtgtacagaatatcttgatagagcagaaaaactaaaggagtacctgaaaaataaagag
aaaaaagcacagaagccagtgaaagaaggacagccgagtccagcagatgagaaggggaat
gacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatcaactt
caaggtgccattgttatagaacgaccaaatgtgaaatggagtgacgttgctggacttgaa
ggagccaaagaagcactgaaagaggctgtgatactgcctattaaatttcctcatcttttt
acaggcaagagaacaccttggaggggaatcctattatttgggccgcctggaacaggaaag
tcctacttagccaaagctgtagcaacagaagccaacaactcaacatttttttcaatatct
tcctctgatcttgtttctaagtggctaggtgaaagtgaaaaactggttaagaatttattc
caacttgccagagagaacaagccctccattatcttcattgatgaaattgattctctctgt
ggttcaagaagtgaaaatgaaagtgaagccgcacgtagaattaagacggagttcctagtg
caaatgcaaggggttggtgtagacaatgatggaattttggttctgggagctacaaatata
ccctgggttctggattctgccattaggcgaagatttgagaaacgaatttatattcccttg
ccggaaccccatgcccgagcagcaatgtttaaactgcacctagggaccactcagaacagt
ctcacggaagcagactttcgggaacttgggaggaaaacagatggttattcaggggcagat
ataagtatcattgtacgtgatgcccttatgcagcctgttaggaaagtacagtcagctact
cattttaaaaaggttcgcggaccttcccgagctgatcctaaccatcttgtagatgatctg
ctaacaccttgctctccaggtgaccctggtgccattgaaatgacatggatggatgtccct
ggagataaacttttggagccagttgtttccatgtcggatatgttgcggtcactatctaac
acaaaacctacagtcaatgaacatgacttgttgaaattaaagaagtttacagaagatttt
ggtcaagaaggctaa

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