Herbaspirillum seropedicae SmR1: Hsero_0861
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Entry
Hsero_0861 CDS
T01268
Name
(GenBank) inactivated superfamily I helicase
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_0861
Enzymes [BR:
hse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hsero_0861
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Hsero_0861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
DUF2797
Motif
Other DBs
NCBI-ProteinID:
ADJ62379
UniProt:
D8J042
LinkDB
All DBs
Position
951188..953962
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AA seq
924 aa
AA seq
DB search
MLSATVPIPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK
AALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR
RNADLLPLAHTLLDLSDELSLALLPEIRASAGEDAIAGRWTQALAQLLAPLAPSAHAMLS
EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH
QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPEASAAAPSALP
LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW
KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIA
GDWQALQTAFADARDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALRE
DGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGA
RLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCINP
EVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSA
PDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSEMPEKRDYGSWLHEILYKYHAH
LRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQ
FAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQ
LAFYGLLAGGVIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAAL
PANGIESVCQYCEMRGLCRKGAWL
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgctgtccgcgaccgtaccgattcccccttcgcccgatttctggcagcaggccgtgcgc
cagctgctgcatccgggacagccgctgggccaggccttgcaagcgcaggcgggtgcggcg
ctggatttctcgggcgtgcagttgatggtgccggcgttttcgcatgcgcagaatttcaag
gccgcgctgagccgcgagttacgccgtccctatatcgcgccgcgcatcaataccctctcg
ggcctgttggccatgcagccgcccggcgaggacgcgccaccttccgagagcgagcggctc
atgcagctctatgcgcaattacgcgagcacggctggctcaagaagatgttttcggcgcgc
cgcaatgccgacctgctgcccttggcgcataccctgctggacttgtccgatgagctgagc
ctggcgctgctgccggagatccgcgccagcgctggagaagacgccatcgccggccgctgg
acgcaggcgctggcgcaactgctggcgccgctggcgccgtcggcgcacgccatgctgtcc
gaagaagcggcgctggtatggcagatatggaagatccagctggatgcgcgcgatcgcatc
gtgcagcgtttcgacgccatgctggacctggccgcacgcgccagcctgccgctgatctgg
gtcagcccgaccgagccggaaccgctggatgcggccttcctggccgcctatgcgcagcac
cagccggtgcgcatcgtcaccctggactggagccgtgcagccatggcgccgctctatccg
ctctacctgtcggcctggggcgagctggtgcgcgaggaggagggccctgcgccggcctac
gaggagttcgccgcatcagcgccacccgaggcatctgcagcagcaccaagcgccttgccc
ttgctctgcccggcgagcgacctggagaacgccgccgtacagagcgcccagatcgtgctg
cgctggctgcagcagggcaagaacgagatcgccatcgtggcgcaggaccgcgtcaccgcg
cgccgcctgcgcgccttgctggaacgcgcccaggtgtcggtggccgacgagaccggctgg
aagctctccaccacccgcgccgccgccgcgctggcggcctggaacgatctggtctcggcg
cgcggcgagaccaatgccttgctcgacctgttgaagtcgcccttcgtcttccccgccgac
cccggtcgcgctgatcgcgtcatgcgtatcgaagcgcgcttgcgtcgcgccaatatcgcc
ggcgactggcaggcgctacagaccgcctttgccgacgcccgcgatccggatgacctgcaa
tgcatcctcaccctggcgcgccaggcagcccgcttcggcggccgcaagacgctctcgcaa
tggtgcgagacccagcgcaggctctgcgaagcgctgggcatggatgcggccctgcgcgaa
gatggcgcgggccagcagtgtctgctcatgctcgatgagatcgccgccgagcagggcgcc
ttgcaggaccaattctcctttgccgagtggcgggccctgctcaacctgcggctggacgcc
acctcctacatgccgcccatcaaggaccgccgggtcgtgatgctgccgctcaatggcgcg
cgcctgcgccgcttcgatgcggtgctggtcattggcgcagatgccgcccacttgccgtcg
ccgccgcaggaaaccctgttcttctccaacgccgtgcggcgcgaactgaacctggccacc
cgcgccacgcgccagcgccagcagttacgtgacctggttgaactgctgtgcatcaatccg
gaagtggtgttgtgctggcagacccaccaggatggcgaacccaatccggtcagcccctgg
atcgagcgactggagctgaaactggcgcagcagggcgcggcgcccttgcagcggctggag
ttgccgccgcccgtgcagcagttgcgggcgctaccttccagcatgcccgcgccaagcgcg
ccggacctgttgccgccgacgctgtcggccagcggtttcggcagtttcctggcctgtccg
tatcagttcttcgcccagcgcatgctgcgcgtggccgtcatggatgaactctcggaaatg
cccgagaagcgcgactacggcagctggctgcacgaaatcctctacaagtatcacgcccac
ctgcgcgacaacgacacgcccttgccggcccgtgcagcgttgctggcgcagttctcggaa
gaggtgttccagcgcgagatgcagcgccatccggccgcactggccttccatgcacggtgg
cagaaggtgatgccggcctatctgctgtgggccaatgaacgcgaagccgagggctggcag
ttcgccttcggtgaagagtcgcaatcgcagaccttgcagtggagtgatggcggcatcgaa
ctgtatggccgcctcgaccgcgtggaccgcaatgagcagggccagcgcgccctgctcgat
tacaagacccgcagcgccgccagcctcaggcagaaggtcaaggaagacgatgaccaccag
ttggccttctatggcctgctggccggtggcgtgatcgaacatgcccactatgtggccctc
gaattgggccccgacaagaagaccggcgacgccgccgcccccgatttcgcccgcagacag
aagatgctccagcaacagatcacgaccaccatgcaagccgtggcgcacggcgcggcgctg
ccggccaacggcatcgaatcggtctgccagtattgcgagatgcgcggcctgtgccgcaag
ggagcctggctgtga
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