Herbaspirillum seropedicae SmR1: Hsero_1755
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Entry
Hsero_1755 CDS
T01268
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hsero_1755 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hse03019
]
Hsero_1755 (pnp)
03016 Transfer RNA biogenesis [BR:
hse03016
]
Hsero_1755 (pnp)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Hsero_1755 (pnp)
Messenger RNA biogenesis [BR:
hse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Hsero_1755 (pnp)
Transfer RNA biogenesis [BR:
hse03016
]
Prokaryotic type
tRNA degradation factors
Hsero_1755 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_2
KhpA-B_KH
DUF5813
Motif
Other DBs
NCBI-ProteinID:
ADJ63268
UniProt:
D8IRE4
LinkDB
All DBs
Position
1985306..1987444
Genome browser
AA seq
712 aa
AA seq
DB search
MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV
NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA
GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE
ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS
ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT
LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF
AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG
KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA
NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEGGEAAAPQEAQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaataaagtaaccaagaccttccagtacggtcagcatcaagtgaccctggaaacc
ggcgaaatcgctcgccaggcttctggcgccgtggtggtgtcggtggaagacaccgtcatc
ctggctaccgtggtggcccgcaaggaagccaagcccggccaggacttcttcccgctgacc
gtcgactacatcgagaagacctatgcagccggccgtatccccggtggtttcttcaagcgt
gaaggcaagccttccgaaaaggaaaccctgacctcgcgcctgatcgatcgtccgatccgc
ccgctgttcccggaaggctacctcaacgaagtgcaggtgatcatccacgtgctgtcggtg
aaccctgagatcgatcctgacatccccgccatgatcggcgcctcggccgccctgtcgctg
gccggcatccccttcaatggcccggtgggcgcagcccgcgtgggttacatcgacggccag
tacgtcctgaacccgaccacttcgcagctcaagtcctcgcaactggacctggtggtggcc
ggtaccgagaccgccgtgctgatggtggaatccgaagccgaccagctgtccgaagaagtc
atgctgggcgccgtcgtgttcggtcacgaccagtccaaggccgtcatcgaagccatccac
gccctggtgcgtgacggcggcaagccggaagtccagtggaccgccccggccaagaacgaa
gccttgatcgcccgcgtctctcaactggccgaaggcccgctgcgcgaagcctaccagacc
aaggacaagcaagcccgtaccgaaaagctcaaggccgtgaccgcccaggtcaacgaagcc
ctggtcgctgaagccgctgccaacaacggcgtggctgcggatgctgccgaagtcggttcc
atcctgttcgacctggaagccaagatcgtgcgttcgcagatcctggaaggcgaaccccgc
atcgacggccgcgacacccgcaccgtgcgtccgatctcgatccgtaccggcgtgctgccg
cgtacccacggttcggccctgttcacccgtggcgaaacgcaagccctggtcatcgcgacc
ctgggtaccgcacgcgacgaacagaagatcgatggtctgctgggtgaatactccgaccgc
ttcatgctccactacaacatgcctccgttcgccaccggcgaaaccggtcgcgtgggcacc
ccgaagcgccgcgaaatcggccacggccgcctggccaagcgcgcgctgatcgccgcgctg
ccggcggctgacgagttcagctactcggtgcgcctggtctcggaaatcaccgagtccaac
ggttcctcctcgatggcgtcggtgtgcggcggctgcctggcattgatggacgccggtgtg
ccgatgaaggcccacgtggccggcatcgccatgggcctgatcaaggaaggcaacaagttc
gccgtgctgaccgacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtg
gccggtactgccaacggcattaccgccctgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaggtcgcgctggagcaggccaaggaaggccgccaccacatcctgggc
aagatgcaggaagccgtgccggccggccgtgccgagctgtccgacttcgcaccgcgcctg
atcaccatcaagatcaacccggaaaagatccgtgacgtgatcggcaagggcggcgcagtc
attcgcgccctgaccgaagaaaccggcacccagatcgacatcagcgacgaaggcgtggtc
accatcgcctccgtggatgcgtcggctggccaggaagccaagcgccgcatcgaagagctg
accgcttccgtggaagtgggcaagatctacgaaggcaccgtcctgaagctgctggacttc
ggcgccatcgtccaggtcctgccgggcaaggatggcctgctgcacatcagccagatcgcc
aacgagcgcgtcaatgccgtggccgactacctgaaggaaggccagcaagtgcgcgtcaag
gttctggaaaccgatgaccgtggccgcctgaagctgtcgatgaaggctgcccaggctgaa
gaaggcggcgaagctgctgctccgcaagaagcccagtaa
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