Halomonas aestuarii: BOX17_08960
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Entry
BOX17_08960 CDS
T04554
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hsi
Halomonas aestuarii
Pathway
hsi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BOX17_08960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsi03021
]
BOX17_08960
03400 DNA repair and recombination proteins [BR:
hsi03400
]
BOX17_08960
Enzymes [BR:
hsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BOX17_08960
Transcription machinery [BR:
hsi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BOX17_08960
DNA repair and recombination proteins [BR:
hsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BOX17_08960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
APE31066
UniProt:
A0A1J0VGD6
LinkDB
All DBs
Position
1953956..1958173
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFMVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQALLKDIDLEEEIGRLREEIPQTNSETKIKKLSKRLKLLEAFQGSGNDPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGYASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTRERINAKGEGMVFSGLDEVERAFGTQ
SVSMHARVKVRLDEVEFDEETGEERHQRRIYDTTVGRALLFRILPDGVPFELVDQPMKKK
AISRLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPDEKAEIVEAAED
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDQVAKAMMTGISKETVVDREGKEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITEPDCGTEKGLTLHPVIEGGDIIVSLAQRV
LGRVVAQDVVDPASEDVLIPRGTLLDEAWCAELDTMGVDEIVVRSTITCQTAHGVCSACY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGKVR
LHNIKHVERSDGKLVVVSRSSALAVADDHGREREYYKLPYGAELDVRDGDSVEAGQSVAK
WDPHTHPIIAEAEGQVQYADLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPLIM
LTDAAGKSVTVTGSDTPVQYPLPGKAIITVDNGAHIGIGEVVARIPVEATGNKDITGGLP
RVADLFEARKPKEPAILAEISGVISFGKETKGKRRLTITPEDGDPFEMLIPKWRQIAVFE
GESVEKGEVISDGPSNPHDILRLLGIAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDAGDSDFIPGDQAELVRVLEQNARLEQEEKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDAERML
HPSAYDVEQELGAQLTALDSDDDEI
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcagtctcagtccgaagagttcgacgcgatc
aagatcacgctggcgtcgccggacatgattcgctcctggtcctacggcgaggtcaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgggacggcctgttctgcgccaag
atcttcggtccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcatcatctgcgagaagtgcggcgtcgaggtcaccaaggccgcggtgcgccgcgag
cggatgggccacatcgagctggcgagcccggtcgcccacatctggttcctcaagtcgctg
ccgtcccgcatcggcatgttcctggacatgaccctgcgtgacatcgagcgggtgctctac
ttcgagagcttcatggtcatcgatccgggcatgaccaccctcgagcgcggccagctgctc
aacgacgagcagtacttcgaggccctcgaggagttcggtgacgacttcgacgcccgcatg
ggcgccgaggcggtccaggcgctgctcaaggacatcgatctcgaggaggagatcggtcgc
ctgcgcgaggagatcccgcagaccaactccgagaccaagatcaagaagctctccaagcgg
ctcaagctgctcgaggccttccagggctcgggcaacgatccggcgtggatggtcatggag
gtgctgccggtgctgccgccggacctgcgcccgctcgtcccgctggacggcggccgcttc
gcgacctccgatctcaacgacctctatcgtcgcgtgatcaaccgcaacaaccgcctcaag
cggctgctcgacctcaatgcgcctgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtggacgcgctgctcgacaacggtcgtcgcggccgggccatcaccggttccaac
aagcgcccgctgaagtcgctcgccgacatgatcaagggcaagcaggggcgtttccgccag
aacctgctgggcaagcgcgtggactactccggccgctcggtcatcaccgtcggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggagctattcaagccgttc
atctactccaagctgcagtccctgggctatgcctccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaggtgtgggacatcctcgccgacgtcatccgcgagcacccc
gtgctgctcaaccgcgctccgaccctgcaccgcctcggcatccaggccttcgagccgctg
ctgatcgagggcaaggcgatccagctgcacccgctggtgtgtgccgcctacaacgccgac
ttcgacggtgaccagatggcggtccacgtgccgctgaccctggaagcccagctcgaggcc
cgcgcgctgatgatggccaccaacaacgtgctgtcaccggccaacggcgagccgatcatc
gtgccgtcccaggacgtggtgctggggctgtactacatgactcgcgagcgcatcaacgcc
aagggcgagggtatggtgttctccggcctcgacgaggtggagcgcgccttcggcacccag
agcgtgtcgatgcacgcccgcgtcaaggtgcgcctggacgaggtcgagttcgacgaggag
accggcgaggagcgccatcagcgtcgcatctacgacaccaccgtcggccgtgcgctgctg
ttccgcatcctccccgacggcgtgcccttcgagctggtcgaccagccgatgaagaagaag
gccatctccaggctgatcaacgaggtctatcgccgcgccggcctcaagccgacggtgatc
ttcgccgaccagctgatgtacaccggtttccgcctggccacctggtccggcgcctccatc
ggcgtcaacgacttcgtcatcccggacgagaaagccgagatcgtcgaggcggccgaggac
gaggtgaaggagatcgaggaccagttctcctccggtctcgtcaccgctggcgagaagtac
aacaaggtcatcgatatctgggcccgggccaacgaccaggtggccaaggcgatgatgacc
gggatctccaaggagaccgtggtggaccgcgagggcaaggaggtcgagcaggactccttc
aatagcgtcttcatcatggccgactccggcgcccggggtagtgccgcccagatccgccag
ctggcgggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatc
gtcgcgaacttccgcgagggcctgaacgtcctgcagtacttcatctcgacccacggcgcg
cggaagggcctggcggacacggcactcaagaccgccaactccggttacctgacccgtcgc
ctggtcgacgtggcccaggacatggtcatcaccgagccggactgcggcaccgagaagggc
ctgaccctgcacccggtgatcgagggcggcgacatcatcgtctccctggcccagcgcgtg
ctcggccgtgtggtcgcccaggacgtggtggacccggccagcgaggacgtgctgatcccg
cgcggcaccctgctcgacgaggcctggtgtgccgaactcgacaccatgggcgtcgacgag
atcgtggtgcgctcgaccatcacctgccagaccgcccacggcgtctgctcggcctgctac
ggccgtgacctggcgcgcggtcaccaggtgaacatcggcgagtccgtgggcgtcatcgcc
gcccagtccatcggcgagccgggcacccagctgaccatgcggactttccacatcggcggg
gcggcctctcgtgcctccgcggtggacagcgtccaggtcaagcacggcggcaaggtgcgc
ctgcacaacatcaagcacgtcgagcgcagcgacggcaagctggtggtggtctcccgctcc
agcgccctggccgtcgccgacgaccacggccgcgagcgcgagtactacaagctcccctac
ggggccgagctggacgtccgcgatggcgacagcgtcgaggccggccagtccgtggccaag
tgggatccgcacacccacccgatcattgccgaggccgagggccaggtgcagtacgccgac
ctcgacgagggcgtcaccatgcaccgcagcgtggacgagatgaccggtctctcctccatc
gaggtgatcgagtcggcggcacgtcccatggcgggccgtgataagcgtccgctgatcatg
ctgaccgacgcggccggcaagtcggtcaccgtcaccggttccgacaccccggtgcagtac
ccgctgcccggcaaggccatcatcaccgtcgacaacggcgcgcacatcggcatcggcgag
gtcgtcgcccgcatcccggtcgaggccaccggcaacaaggacatcaccggcggtctgccg
cgtgtcgccgacctgttcgaggcgcgcaagccgaaggagccggccatcctcgccgagatc
agcggcgtgatcagcttcggcaaggagaccaagggcaagcgtcgtctgacgatcaccccg
gaagacggcgatcccttcgagatgctgatcccgaagtggcgccagatcgcggtgttcgag
ggcgagtcggtcgagaagggcgaggtgatctcggacggcccgagcaacccgcacgacatc
ctgcgcctgctgggcatcgccgagctggccaagtacatcaccgccgaggtgcaggacgtc
taccgcctgcagggcgtgggcatcaacgacaagcacatcgaggtgatcgtgcgtcagatg
ctgcgcaaggtggagatcaccgatgccggcgacagcgacttcatcccgggcgaccaggcc
gagctggtccgcgtgctcgagcagaacgcccggctggagcaggaagagaagttcccggcc
aagtaccagcggctgctgctgggtatcaccaaggcgagcctcgccaccgagtcgttcatc
tccgcggcctccttccaggagaccacgcgggtgctgaccgaggcggcggtgaccggcaag
cgtgactacctgcgtggcctcaaggagaacgtggtggtggggcgcctgatcccggccggt
accggcctcacccaccacgcggagcgtcgccgcaagcgtgaagacgccgagcggatgctc
cacccgtcggcctacgacgtcgagcaggagctgggcgcccagctcaccgcgctggactcg
gacgacgacgagatctga
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integrated database retrieval system
