KEGG   Hydrogenobacter thermophilus: Hydth_1454Help
Entry
Hydth_1454        CDS       T02106                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hte  Hydrogenobacter thermophilus
Pathway
hte03030  DNA replication
hte03410  Base excision repair
hte03420  Nucleotide excision repair
hte03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hte00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Hydth_1454
   03410 Base excision repair
    Hydth_1454
   03420 Nucleotide excision repair
    Hydth_1454
   03430 Mismatch repair
    Hydth_1454
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hte03032]
    Hydth_1454
   03400 DNA repair and recombination proteins [BR:hte03400]
    Hydth_1454
Enzymes [BR:hte01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Hydth_1454
    6.5.1.6  DNA ligase (ATP or NAD+)
     Hydth_1454
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Hydth_1454
DNA replication proteins [BR:hte03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Hydth_1454
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Hydth_1454
DNA repair and recombination proteins [BR:hte03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Hydth_1454
   NER (nucleotide excision repair)
    Other NER factors
     Hydth_1454
   MMR (mismatch excision repair)
    Other MMR factors
     Hydth_1454
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PPP5 CNOT1_HEAT_N
Motif
Other DBs
NCBI-ProteinID: ADO45838
UniProt: D3DJB4
LinkDB All DBs
Position
1336900..1338618
Genome map
AA seq 572 aa AA seqDB search
MKFKELSQYFQRLEETTSRLEMSNILADMLGKATYEDIDKMVYLTLGEILPPFRGIELGV
SEKLMTEALSKSSNTKISEVEKLYKLTGDLGEVAYKLVNWEGRDLTVGQVYDEILDIATT
RGTKDKVLRIMSLLKGLSNLEAKYITRIIVGRLRLGVGDATLIEALANLVGGKEHKTDIE
RAYNLCSDLGLVAKTLIQKGLEGIRSFKVQVGYPIRMALAERVTNAEEIVRRLGRCAVEA
KYDGFRLQVHKKDKDVEIYSRNLERMTDMFPDVKSAILQHIKFRELVLEGEAITYNEETG
EFYPFQITIQRKRKYGVYEYAKEFPLKLFAFDLLYLEGEDFTSKPFIDRRRKLEEILPKN
SLILPSEMFITDSVKEIERFFEDAVARGLEGIMAKRLDAPYTAGSRNFNWIKLKRSYKGS
LADTIDVVIVGYFYGKGSRAKLGIGALLTALYDPATDTFKTVSKVGSGFTEEEWIKLKEM
LDEIKLPHRHARVDSLLEADVWVEPKYVITVNADEITRSPLHTAGRTTEEPGFALRFPRA
VGFIRSDKRAEDANTVEEIENMYKMQKRVSVE
NT seq 1719 nt NT seq  +upstreamnt  +downstreamnt
atgaagtttaaagagctttcccagtactttcagagattggaagagaccacaagcagattg
gaaatgtccaacattctggcagacatgcttggcaaagcaacatacgaagatatagacaaa
atggtttatctcactcttggagagatactgccacctttcaggggcattgagctcggtgta
tccgaaaagctaatgacggaagctctttctaaatcttccaacacaaaaatctctgaagtg
gaaaaactttacaagctcaccggggacctgggagaggtggcttataagctggtaaattgg
gaagggagagacctcactgtcgggcaggtttatgacgagattttggatatagcaacaaca
aggggcacaaaagataaagtcctcagaataatgagtcttctgaaaggtctttcaaatctg
gaagccaagtacatcacaagaataatagtgggtaggctcaggctgggtgtgggagacgcc
acactgatagaagctctggctaatcttgttggtggcaaggaacacaaaacagacatagaa
agagcatataacctctgttctgaccttggtttggtagcaaaaactctcatacagaaaggc
ttggaaggcataaggagctttaaagtgcaggtaggctatcccatcaggatggctcttgca
gagagagttacaaatgcagaggagatagttagaaggcttggaaggtgtgcagtagaagcc
aagtacgacggctttagacttcaggtgcacaaaaaagacaaagatgtagaaatatattcc
aggaacctggagaggatgacggacatgttccccgatgtaaagtcagctattttacagcat
ataaagttcagagagttggtgctggagggtgaagctataacctacaacgaggagacggga
gagttttacccttttcagataaccatacagaggaagagaaagtacggtgtatatgagtat
gcaaaagaatttcccctaaagctctttgcctttgacctgctttacttggagggtgaggac
tttacttcaaaacctttcatagatcgcaggaggaagctggaggagatactcccaaaaaac
tcgctcatacttccctcagaaatgtttataaccgatagcgtcaaagagatagagagattc
tttgaggatgctgtggcgagaggcttagagggtataatggcaaagaggttagacgctcct
tacactgccggttcaagaaacttcaactggataaagctaaagaggagctacaaaggttcc
cttgctgacaccatagatgtggttatagtgggatacttttacggaaagggaagcagggca
aagttaggaataggagctctgctgacagccctctatgaccctgcaacagatacctttaaa
actgtcagcaaggtaggttcaggctttaccgaagaggagtggataaaactcaaagagatg
ctggatgaaataaaacttccccacagacatgcaagggttgactcccttctggaagctgat
gtttgggttgagcctaagtatgtaataacggtgaatgccgacgaaataaccagatctcca
cttcatacagctggaaggaccacagaagaaccgggctttgccctaagatttccaagagct
gttggatttataaggagcgacaaaagagcagaggatgccaacacagtggaagagatagag
aacatgtacaagatgcagaaaagagtaagtgttgagtag

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