KEGG   Humibacter sp. BT305: DVJ78_06110Help
Entry
DVJ78_06110       CDS       T05558                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hum  Humibacter sp. BT305
Pathway
hum03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DVJ78_06110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hum03400]
    DVJ78_06110
Enzymes [BR:hum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DVJ78_06110
DNA repair and recombination proteins [BR:hum03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DVJ78_06110
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AXH35043
UniProt: A0A345JWQ4
LinkDB All DBs
Position
complement(1275633..1278296)
Genome map
AA seq 887 aa AA seqDB search
MAPKKDEQVVTVGGHRLKITNLDKVLYPETGTTKGDVLRYYSQIAPFLIPHARNRPATRK
RWVNGVGTPEDPGSVFFQKDLDAGTPDWVKRVEIEHSEGPKTYPLVNDEATLVWLAQIAA
LEVHVPQWRVDAHGRRKNPDRFVIDLDPGEGAGLPECVEVAKRARRILTDMGLDPVPVTS
GSKGIHLYAALDGTQTSDQVSAVAHELARALEADDPDLVVSDMKKSLRTGRVLVDWSQNN
ANKTTICPYSLRGRFRPTVAVPRTWRELASKDLRHLELDEVLTRMRRRADPLAESADAPG
SVEAPGGVWHSDRGADDQPEAHPGEPDRLTVYRSKRDAAKTPEPVPEASPADTGGRSFVI
QEHHASRLHWDFRLEHDGVLVSWALPKGVPTDAGQNHLAVMTEDHPLEYGTFEGTIPEGE
YGGGTVTIWDFGTYELEKWRDDEVIATLHGQPSGGLSEPRRVALIRTGGRGGKDPKNWLI
HLMKDQHSVDWDDPASVAASKERTRGAAKRDSDGGAKRESSGGSSSRENSGSSAEKRGSG
GSAAKRDSGGTKRAAAPAAHRDLFDRTRIPSPMLATLGQATDIRDEDEWAFEMKWDGIRA
LVLADHGRVALVTRNGNDVTAAYPELVEELAAATADRELLLDAEVVALDAKGRPSFGRLQ
QRMGLSKPREVEAAARRVRVDLMVFDLLEEDGEPLVDEPYDERRRRLEDALPASSGRLHV
PPAFDGDLDHALTSSRELGLEGVMAKRRASTYTARRTRDWIKLKHHLAQEVVIGGWRPGN
GRRASQVGSLLLGVPDAAGGLQYVGRVGTGFTDRQLADIAAKLAPLARKTSPFVDVPRPD
ARDAQWVTPKLVGEVEFAEWTGDDRLRQPSWRGWRTDKEPSDVVREG
NT seq 2664 nt NT seq  +upstreamnt  +downstreamnt
atggccccgaagaaggacgagcaggtggtcacggtcggtgggcaccggctgaagatcacc
aacctcgacaaggtgctctaccccgagaccgggacgacgaagggcgacgtgctgcggtac
tactcgcagatcgcgcccttcctcatcccgcacgcgcgcaaccggcctgccacccgcaag
cggtgggtgaacggggtcgggacgcccgaggacccggggtcggtgttcttccagaaggac
ctcgacgcggggacgcccgactgggtcaagcgggtggagatcgagcactccgagggtccg
aagacctatccgctcgtcaacgacgaggccacgctcgtctggctcgcccagatcgcggcg
ctcgaggtgcacgtgcctcagtggcgggtggatgcgcatggccgccgcaagaaccccgac
cggttcgtcatcgacctcgaccccggcgagggcgcgggcctgcccgagtgcgtcgaggtg
gccaagcgcgcccgccgcatcctgaccgacatggggctcgacccggtccccgtcacgagc
ggcagcaagggcatccacctctacgccgccctcgacgggacgcagacctccgaccaggtg
tcggcggtggcccacgagctcgcgcgcgccctcgaggcggacgaccccgacctcgtcgtc
agcgacatgaagaagtcgctgcgcaccggcagggtgctcgtcgactggagccagaacaac
gccaacaagacgaccatctgcccctactcgctgcggggccgcttccgccccacggtcgcc
gtgccgcgcacctggcgggagctggcctcgaaggacctccgccacctcgagctcgacgag
gtgctgacgcggatgcggcgacgcgccgatccgctcgccgagagcgccgacgcgcccggc
tcggtggaggcgccgggcggcgtgtggcactcggaccgcggggccgacgaccagcccgag
gcgcatccgggcgaacccgacaggctcaccgtgtaccggtcgaagcgcgatgcggcgaag
acgcctgagccggtgcccgaggcgtcgcccgccgacaccggcgggcggtcgttcgtgatc
caggagcaccacgcctcgcggctgcactgggacttccggctcgagcacgacggcgtgctg
gtgtcgtgggcgctgcccaagggggtgccgacggatgcgggccagaaccacctcgccgtg
atgacggaggaccatccgctcgagtacggcaccttcgagggcaccatccccgagggcgag
tacggcggcgggacggtcaccatctgggacttcggcacctacgagctggagaagtggcgc
gacgacgaggtgatcgccacgctccacggccagccgtcgggcggtctgagcgaaccccgg
agggtggcgctcatccgcaccgggggccgcggagggaaggacccgaagaactggctgatc
cacctcatgaaggatcagcacagcgtggactgggacgacccggcgtcggtcgccgcgtcg
aaggagcgcacgcggggcgccgcgaagcgcgacagcgacggcggcgcgaagcgcgagagc
agcggcggcagcagctcgcgcgagaacagcggcagcagcgccgagaagcggggcagcggc
ggcagcgccgcgaagcgcgatagcggcggcacgaagcgcgcggccgcgcccgccgctcac
cgcgacctcttcgaccgcacgcgcatcccttcgcccatgctcgccaccctcggccaggcc
accgacatccgcgacgaggacgagtgggcgttcgagatgaagtgggacggcatccgcgcc
ctggtgctcgccgaccacggcagggtggctctcgtcacgcgcaacggcaacgacgtcacg
gccgcctaccccgagctcgtcgaggagctcgcggcggccaccgccgaccgcgagctgctc
ctcgacgccgaggtcgtggccctcgacgcgaagggccgcccgagcttcggccgcctgcag
cagcggatggggttgagcaagccgcgcgaggtcgaggcggcggccaggagggtcagggtc
gacctcatggtcttcgacctcctcgaggaggacggcgagcccctcgtcgacgagccctac
gacgagcggcggcggcggctcgaggacgccctgcccgcctcctccggacgtctgcacgtg
cctccggccttcgacggcgatctcgaccacgccctcacgtcgagccgggagctgggcctg
gagggcgtgatggcgaagcgccgggccagcacgtacaccgcccgccggacgcgcgactgg
atcaagctcaagcaccacctcgcccaggaggtcgtgatcgggggctggcgccccggcaac
ggacggcgggcgtcgcaggtggggtcgctgctcctcggggtccctgatgcggcgggcggg
ctgcagtacgtcggccgtgtcggcacggggttcaccgatcgtcagctcgccgacatcgcg
gcgaagctcgccccgctcgcgcggaagacctctcccttcgtcgacgtgccccgtcccgac
gcgcgtgacgcccagtgggtgacaccgaagctcgtcggcgaggtcgagttcgcggagtgg
acgggcgacgaccgactgcgccagccgtcctggcgcggatggcgcaccgacaaggaaccc
tcggacgtcgtccgcgagggatga

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