Humibacter ginsenosidimutans: FPZ11_09865
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Entry
FPZ11_09865 CDS
T06119
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
huw
Humibacter ginsenosidimutans
Pathway
huw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPZ11_09865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
huw03021
]
FPZ11_09865 (rpoB)
03400 DNA repair and recombination proteins [BR:
huw03400
]
FPZ11_09865 (rpoB)
Enzymes [BR:
huw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPZ11_09865 (rpoB)
Transcription machinery [BR:
huw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPZ11_09865 (rpoB)
DNA repair and recombination proteins [BR:
huw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPZ11_09865 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QDZ15035
UniProt:
A0A5B8M5B4
LinkDB
All DBs
Position
complement(2141000..2144527)
Genome browser
AA seq
1175 aa
AA seq
DB search
MAAARNASSTITPKNGRNHSRLSFAKITDTLTVPDLLALQTESFDWLVGSDAWKARVAEA
EAQGRQDLPSHSGLEEIFEEISPIEDLGETMQLSFTNPFLEEKKYSIDECKEKGKTYSAP
LYVEAEFMNHITGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERTPE
KTSDKDIYSARIIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILEEF
KGFTSIELTLEKDTILTKEEALKDIYRKLRPGEQVAAEAARALLDNYYFNPKRYDLAKVG
RYKINRKLGLEAPLADSVLTNADIIKTIKYIVALHDPTAPGVKQLGEGVYAIDGTRNGKA
ADIRLDVDDIDHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINV
RPVVAAIKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGVEVRDVHPSHY
GRMCPIETPEGPNIGLIGSLASFARINSFGFIETPYRRVVKGKVTDHIDYLTAFEEDDFI
VAQANAPLKADGHFAEDRVLARQKGGEVDLVPADLIGYMDVSPRQMVSVGTSLIPFLEHD
DANRALMGANMQRQAVPLVRSESPNVGTGMEGYAAIDAGDVLTAEKAGVVAEVSADAVTI
QLDEGGTQTYYLRKFDRSNQGTSYNHRVIVNAGERIEAGEVIADGPATENGELALGKNLL
VAFMPWEGYNYEDAIILSQNLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSQDL
LADLDERGIIRIGAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVP
HGEEGTVIGVKVFDAVDGDDELGSGVNQRVVVFIAQKRKITAGDKLAGRHGNKGVISRIL
PVEDMPFLADGTPVDVILNPLGVPGRMNFGQVLEIHLGWAAKQGWKVDGNPAWAKALPEV
AREAAPNTKVATPVFDGALEEEIAGLLDSTTPNRDGERLIDHTGKTQLFDGRSGEPFPEP
ISVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAA
YALQELLTVKSDDILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADG
TPVSLRDTDDEAYRAAEELGINLSSHFESSSIDEI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcatcttccaccatcacacccaagaacggacgaaaccactct
cgtctctcgttcgccaagatcaccgacaccctcacagttccggacctcctcgcactgcag
acggagagcttcgactggctggtcggcagcgacgcgtggaaggctcgcgtcgcagaagcc
gaggctcaggggcgtcaggatctgcccagccactcaggtctcgaggagatcttcgaggag
atctctccgatcgaagacctcggcgagaccatgcagctgagcttcaccaaccccttcctc
gaggagaagaagtactccatcgacgagtgcaaggagaagggcaagacctactccgcgccg
ctgtacgtcgaggcggagttcatgaaccacatcacgggtgagatcaagacccagacggtg
ttcatgggtgacttcccgctgatgaccgagaagggcacgttcatcatcaacggcaccgag
cgtgtcgtcgtgtcccagctcgtgcgcagccccggcgtgtacttcgagcgcaccccggag
aagacctccgacaaggacatctactcggcgcgcatcatcccgagccgtggtgcatggctc
gagttcgagatcgacaagcgcgaccaggtgggcgtgcgcatcgatcgcaagcgcaagcag
tccgtgaccgtcttcctcaaggccctcggcctcacgagcgaggagatcctcgaggagttc
aagggcttcacgtccatcgagctgaccctcgagaaggacaccatcctcaccaaggaggag
gcgctcaaggacatctaccgcaagctgcgtccgggtgagcaggtcgctgcagaggccgcg
cgtgcgctgctcgacaactactacttcaacccgaagcgctacgacctcgcgaaggtcggc
aggtacaagatcaaccgcaagctcggtctcgaggccccgctggccgactccgtgctgacc
aacgccgacatcatcaagaccatcaagtacatcgtggctctgcacgacccgacagctccc
ggtgtgaagcagctcggtgagggtgtctacgcgatcgacggcacgcgcaacggcaaggcc
gcggacatccgcctggacgtcgacgacatcgaccacttcggaaaccgtcgcatccgcgcg
gtcggcgagctcatccagaaccaggtgcgcaccggcctcagccgcatggagcgcgtggtg
cgcgagcgcatgaccacgcaggacatcgaggcgatcacgccgcagaccctgatcaacgtg
cgccccgtcgtggccgcgatcaaggagttcttcggaacgagccagctgtcgcagttcatg
gaccagaacaacccgctcgcgggtctgacccacaagcgccgcctgtcggcgctcggcccc
ggtggtctgtcccgtgaccgcgcaggcgtcgaggtgcgcgacgttcacccgtcgcactac
ggccgcatgtgcccgatcgagacgcctgaaggcccgaacatcggtctgatcggctcgctg
gcatccttcgcccgcatcaactcgttcggcttcatcgagacgccgtaccgccgcgtggtc
aagggcaaggtcaccgaccacatcgactacctcacggcgttcgaagaggacgacttcatc
gtcgcccaggccaacgcgccgctgaaggccgacggccacttcgccgaagaccgcgtgctc
gcccgtcagaagggcggcgaggtcgacctcgttccggccgacctgatcgggtacatggat
gtctcgccgcgccagatggtctcggtcggcacctcgctcatcccgttcctcgagcacgac
gacgcgaaccgcgccctcatgggtgcgaacatgcagcgtcaggccgtgccgctggtgcgc
agcgagtctccgaacgtcggtaccggcatggagggctacgcagccatcgacgccggcgac
gtgctcacggccgagaaggccggtgtcgtcgccgaggtctcggccgacgccgtcaccatc
cagctcgacgagggcggaacgcagacctactacctgcgcaagttcgaccgctccaaccag
ggcacgagctacaaccaccgcgtgatcgtcaacgcgggcgagcgcatcgaggcgggcgag
gtcatcgcggatggcccggccaccgagaacggcgagctcgcgctcggcaagaaccttctc
gtggcgttcatgccgtgggagggctacaactacgaggacgcgatcatcctcagccagaac
ctggtgaaggacgacaccctctcctcgatccacatcgaggagtacgaggtggatgcccgc
gacaccaagctgggcaaggaagagatcacccgcgacctgccgaacgtcagccaggacctg
ctggccgacctcgacgagcgcggcatcatccgcatcggtgcagaggttcgccccggcgac
atcctcgtcggcaaggtcaccccgaagggcgagaccgagctgagcgccgaggagcgcctg
ctgcgcgccatcttcaacgagaagagccgtgaggtgcgcgacacctcgctgaaggttccg
cacggcgaagagggcacggtcatcggcgtcaaggtgttcgacgcggtcgacggcgacgac
gagctcggcagcggtgtgaaccagcgagtcgtggtgttcatcgcccagaagcgcaagatc
accgcgggcgacaagctcgccggccgtcacggcaacaagggcgtcatctcgcgcatcctg
cccgttgaggacatgccgttcctcgcggacggcacgccggtcgacgtcatcctgaacccg
ctgggtgttcccggccgcatgaacttcggccaggtgctggagatccacctcggatgggcc
gccaagcagggctggaaggtcgacggcaacccggcgtgggccaaggcactgcccgaggtc
gcccgtgaggccgccccgaacaccaaggtcgcgaccccggtgttcgacggtgcgctggag
gaggagatcgcgggtctgctcgactcgacgaccccgaaccgcgacggcgagcgtctgatc
gaccacaccggcaagacgcagctcttcgacggccgttccggcgagccgttcccggagccc
atctcggtcggctacatgtacatcctcaagctgcaccacctggtcgacgacaagatccac
gcgcgttcgaccggtccgtactcgatgatcacccagcagccgctcggtggtaaggcgcag
ttcggtggtcagcgcttcggtgagatggaggtgtgggccctggaggcgtacggcgccgcc
tacgcgctgcaggagctgctcaccgtcaagtccgacgacatcctgggccgcgtgaaggtg
tacgaggccatcgtcaagggcgagaacatccaggagccgggcatcccggagtccttcaag
gttctcatcaaggaaatgcagtcgctgtgcctgaacgtcgaggttctctcggccgacggc
accccggtgagccttcgggacaccgacgacgaggcttaccgcgcggcggaggagctcggc
atcaacctgtccagccacttcgagtcttcgtcgatcgacgagatctga
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integrated database retrieval system
