Halopiger xanaduensis: Halxa_0751
Help
Entry
Halxa_0751 CDS
T01532
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hxa
Halopiger xanaduensis
Brite
KEGG Orthology (KO) [BR:
hxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hxa03016
]
Halxa_0751
Enzymes [BR:
hxa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Halxa_0751
Transfer RNA biogenesis [BR:
hxa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Halxa_0751
Prokaryotic type
tRNA splicing ligases
Halxa_0751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEH35390
UniProt:
F8D6D6
LinkDB
All DBs
Position
complement(64137..65603)
Genome browser
AA seq
488 aa
AA seq
DB search
MSKPTFDADGITLEQVREFVWEIPQEGDMRTPARVLASESLLEEIKEDKTLEQLKNTTHL
PGITNYAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCGVRMMRTNLTYDELQ
GREEELVDSLFANIPSGLGGGGIVEAGVDTVEEILERGVDWALENGHAVEEDLLHCEDEG
MRAGADADKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDDVGEAFGLEEDQIVVLI
HCGSRGLGHQTCNDYLRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYAAMNAAINFAW
VNRQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVDGEERELYVHRKGAT
RAFPAGHPEVPKAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQ
AKNEFWGGDVQQQLEEQDRIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVART
FPVCNIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcccacgttcgacgcggacggtatcacgctcgagcaggtgcgcgagttcgtc
tgggagattccgcaggagggcgacatgcgcacacccgctcgagtgctggccagcgaatcg
ctcctcgaggagatcaaggaggacaagacgctcgagcaactcaaaaatacgacccacctg
cccgggatcaccaactacgcgatctgcatgcccgacggccaccagggctacggcttcccc
gtcggcggcgtcggcgcgctcgacgccgagaacggctgtatctcgccgggagcggtcggc
tacgacatcaactgcggcgtccggatgatgcggacgaacctgacttacgacgagctccag
ggtcgcgaggaggaactcgtcgactccctctttgccaatatcccgtcgggcctcggcggc
ggcggcatcgtcgaggccggcgtcgacaccgtcgaggaaatcttagagcgcggcgtcgac
tgggcgctcgagaacggtcacgccgtcgaggaggatctgctacactgcgaggacgagggg
atgcgcgcgggcgccgacgccgacaaggtcagccagaaggccaaggaccgcgggaagaac
cagatcggctcgctgggctcgggcaatcacttcctcgaggtacagcgcgtgaccgacgtc
ttcgacgacgacgtgggggaggcgttcggcctcgaggaggaccagatcgtcgtcctgatc
cactgcggctcgcgcgggctgggccaccagacgtgcaacgattaccttcgcaagatcgaa
cagcaacaccagggcctgttgaaccagttgccggacaaggaactggccgcggcgcccgca
gggtcgcagctggcggaggactactacgcggcgatgaacgcggcgatcaacttcgcgtgg
gtcaaccgccagctgatcatgcaccgcacgcggcaggtcttcgagcgggtgttcgatcga
tcctgggaggagatggacatgcacctgctgtacgacgtggcccacaacatcgcgaagaag
gagactcacaccgtcgacggtgaggagcgcgagctctacgtccaccgcaagggcgcgacg
cgcgccttccctgccggccaccccgaagtcccgaaggcctaccgcgacgtcggccagccg
gtcatcatccccggcagcatgggcgccggtagctacgtcctgcgcggcggcgagaactcg
atggacctcacgttcggctcgaccgcccacggcgcgggccggctgatgagccgcacgcaa
gcgaagaacgagttctggggcggcgacgtgcaacagcaactcgaggagcaggatcggatc
tacgtgaaggcccagtcgggcgcgacggtcgccgaggaggcgccgggcgtctacaaggac
gtcgacgaggtcgtccgcgtctcggacgcgctggggatcggcgacaaggtcgcccggacg
ttccccgtctgcaacatcaagggctga
DBGET
integrated database retrieval system
