Hydrogenophaga sp. PBC: Q5W_02000
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Entry
Q5W_02000 CDS
T04491
Name
(GenBank) hypothetical protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03030
DNA replication
hyb03430
Mismatch repair
hyb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5W_02000
03430 Mismatch repair
Q5W_02000
03440 Homologous recombination
Q5W_02000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyb03032
]
Q5W_02000
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_02000
Enzymes [BR:
hyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q5W_02000
DNA replication proteins [BR:
hyb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q5W_02000
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q5W_02000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AOS77842
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All DBs
Position
398662..399315
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AA seq
217 aa
AA seq
DB search
MSAWWSGWFGRALDPLPAATERWVALDVETSGLDVARDRLLAIAAIGLCVDWTRGRLDVR
LGDSFEVVLRQDEVSSRDNILLHGIGAQSQRDGLEPVAALRAFEAFVGAAPLLAFHSAFD
EALIGRHVRRYLGHRLANSWVDIEHLCAVTHPQVRARSLDEWMAYFGIVCPRRPQAAADT
LAECELLQRVWPALAGECRSWRDVRTVAARRRWLASA
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcttggtggtcgggttggttcggccgcgcccttgacccgctcccggcggccact
gagcgctgggtggcgctggacgtggagaccagcggcttggacgtggcgcgcgaccgcctg
ttggcgatcgccgccatcgggctgtgcgtggactggacgcgcggtcggctggacgtgcgc
ctgggcgatagcttcgaggtggtgctgcgccaggacgaggtgtccagtcgcgacaacatc
ctgctgcacggcatcggcgcgcagagccagcgcgacgggctcgagccggtggcggcgctg
cgcgccttcgaggccttcgttggcgccgcgccgctgttggcgttccacagcgctttcgac
gaggccctgatcggcaggcatgtgcgccggtacctcggtcatcggctggccaattcctgg
gtggacatcgagcacctgtgcgccgtcacgcatccccaggtgcgggcgcgctcgctggac
gagtggatggcgtatttcggtatcgtctgcccgcggcggccccaggccgcggccgacacg
ctggccgaatgcgagttgttgcagcgcgtttggccggccctggcgggggagtgccgcagt
tggcgcgacgtgcggacggtggctgcgcggcgccgctggctggcgtccgcctag
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