KEGG   Hydrogenophaga sp. PBC: Q5W_13765Help
Entry
Q5W_13765         CDS       T04491                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hyb  Hydrogenophaga sp. PBC
Pathway
hyb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Q5W_13765 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hyb03400]
    Q5W_13765 (ligD)
Enzymes [BR:hyb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Q5W_13765 (ligD)
DNA repair and recombination proteins [BR:hyb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Q5W_13765 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOS79955
UniProt: A0A1C9VGS1
LinkDB All DBs
Position
complement(2904537..2907038)
Genome map
AA seq 833 aa AA seqDB search
MAASRGDKALRRYQAKRDFSVTPEPGAALGEAGPALSFVVQKHHARRLHYDFRLELDGVM
KSWAVPKGPSLDPADKRMAVEVEDHPVAYASFEGTIPPKQYGAGEVIVWDKGHWQPRGDP
RKGLRTGNLKFEMTGHKLRGAWALVRMKGRDEKKPAWLLIKERDDFARPADEFDVLQADP
DSVSALGVPAPAGWPAAAVPAGLPDTLSPQLAVRAEQPPPDGGEWLYELKFDGYRLLARI
DDRGVRLLTRSGLDWTHRLRPLCRDLAGMKLPPGWYDGELVAFNDRGLPDFGVLQQSLER
ARPGELVLYLFDLPYAAGHDLRAAPLDERRTLLERLIGPTPPDSVRLSAVLEVPGRDVLA
SACRLGLEGVIAKRRDAPYRSRRSEDWLKIKCGLRQEFVIGGFTEGQGTRAGFGSLMLGV
YDRDGALRHVGNVGSGFDTRTLASLHRRLKALERRASAFARTARPTTRPHWVEPRLVAEV
AFAGWTHGGHIRQGVFVGLREDKEARDVTREIPKPTDPPAPVPEPTEPVVPAQPPTAGAR
SLRVTNPQRVIDRRSGLTKLDLVRHYEAVGELMMVHLRERPVALLRAPRGIAGQRFFQKH
MDNELPGIVQLDPALSPGHAPWIAVASARGLLSAAQWNVVEVHTQNASHRRFEQPNRLVF
DLDPGEGVAWPRMQEAALLMQALLDQLGLVGYLKTSGGKGLHVVVPLRPQHGWDTVKGFS
KAVVQHMARTLPDRFVAKSGPRNRVGKVFVDYLRNGRGATTVSAWSARARPGMGVSVPVD
WGELDALEGGDHWTVRNLHERLATGNEPWADYPRRARTLSAAMKRLGFKPEGD
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
atggccgcgtcgaggggcgacaaggccctgcggcgctatcaggccaagcgcgatttttcc
gtcacgcccgagccgggcgcggcgctgggcgaggccggccccgcgctgtcgttcgtggtg
cagaagcaccacgcgcgacgcctgcactacgactttcgcctcgagctggacggcgtaatg
aaaagctgggccgtgcccaagggtcccagcctggacccggccgacaaacgcatggccgtc
gaagtggaggaccatcccgtggcctatgcatcctttgaaggcaccatcccgcccaagcag
tacggcgcgggcgaggtcatcgtgtgggacaagggccactggcagccgcgcggcgacccg
cgcaagggtttgcgcaccgggaatctgaagttcgagatgaccggccacaagctgcgcggc
gcctgggccctggtccgcatgaagggccgcgacgagaaaaaaccggcatggctgttgatc
aaggagcgcgacgatttcgcgcgcccggcggatgagtttgacgtgctgcaagccgacccg
gacagcgtgtccgcgctgggcgtgccggccccggccggctggccagccgccgcggtgccc
gccggcttgccggacacgctctcgccgcaactcgccgtgcgcgcggaacagcccccgccc
gacggcggtgaatggttgtacgaactcaaattcgacggttaccgcctgctggcgcgcatc
gacgaccgtggtgtgcgactcctgacccgcagcggcctggactggacgcaccgcctcagg
cccctatgccgcgacctggcgggcatgaagctgccgccgggctggtacgacggtgagctc
gtggcgttcaacgaccgcggcctgcccgacttcggtgtgctgcagcaatcgctggagcgc
gcccgccccggcgagctggtgctctacctgttcgacctgccgtacgccgccggccacgac
ttgcgtgccgcaccgctggacgaacgccggaccttgctggagcgcctgatcgggcccaca
ccgcccgacagcgtgcgcctgagcgcggtcctggaggtgcctggccgcgacgtgctggcc
tcggcctgtcggctgggcctggaaggcgtgatcgccaagcgccgtgacgcgccttaccgc
agccgccgcagcgaggattggctcaagatcaagtgcggcctgcgccaggaattcgtcatc
ggcggcttcaccgaagggcagggcacgcgcgccggtttcggctcgctcatgcttggcgtg
tacgaccgcgacggcgcgctgcgccacgtgggcaacgtgggcagcggcttcgacacccgc
accctggccagcctgcaccggcgcttgaaggcactggagcgccgcgcatcggcgtttgcc
cgcaccgcccgaccgaccacgcgcccgcactgggtggaaccgcgcctggtggccgaggtc
gccttcgcgggttggacgcacggcggccacatccgccagggcgtgttcgtcggcctgcgc
gaagacaaggaggcccgtgacgtgacgcgagaaatccccaagcccacagacccgcccgca
cccgtgccggagcccaccgagcccgtggtgcccgcccagccgcccacggccggcgcccgc
agcttgcgcgtgacgaacccccagcgcgtgatcgatcgccgcagcggcctgaccaagctc
gatctggtgcgccactacgaggccgtgggcgagctgatgatggtccacctgcgcgagcgg
cccgtggccctgctgcgcgccccgcgcggcatcgcgggccagcgcttcttccagaaacac
atggacaacgagctgcccggcatcgtgcagctcgacccggcgctctcgcccggccacgcg
ccgtggatcgccgtggccagcgcgcgcggcctgctgtcggccgcgcagtggaacgtggtg
gaggtgcacacgcagaacgcttcgcaccgccgcttcgagcagcccaaccgcctggtgttc
gacctcgaccccggcgagggtgtggcctggccccgcatgcaggaagcggcactcttgatg
caggcgctgctcgaccagttgggcctggtcggctacctgaagaccagcggcggcaagggc
ctgcacgtggtggtgccgctgcgcccgcaacacggttgggacacggtgaagggcttttcc
aaggccgtggtccagcacatggcgcgcaccttgccagaccgcttcgtcgccaagagcggg
ccgaggaaccgcgtgggcaaggtcttcgtggactacctgcgcaacgggcgcggcgccacc
acggtgagcgcctggtcggcgcgcgcgcgcccgggcatgggcgtgtcggtgccggtggac
tggggcgaactcgacgcgttggagggcggcgaccactggacggtgcgcaacctgcacgaa
cgcctggccacgggcaacgaaccctgggccgactacccgcgccgcgcgcgcacgctcagc
gccgccatgaagcggctgggcttcaagcctgaaggggactga

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