Hymenobacter oligotrophus: D3Y59_01280
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Entry
D3Y59_01280 CDS
T05656
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y59_01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyh03019
]
D3Y59_01280
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3Y59_01280
Messenger RNA biogenesis [BR:
hyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3Y59_01280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
AAA_22
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AYA38742
UniProt:
A0A3B7R4N4
LinkDB
All DBs
Position
complement(322288..323787)
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AA seq
499 aa
AA seq
DB search
MGYTKPSPIQEQAIPAALAGKDLIACAQTGTGKTAAYLLPVLDFIAYERPEHTTALILCP
TRELAKQIDEQVEGFGYHVGASSIAIYGGGKSDIWEQQKRALTQGADIIIATPGRLIAHM
QLGYVKLDQIDFLILDEADKMMDMGFAEDIIQIVNQLPTKRQTLLFSATMPNKIREFSKK
ILHEPEEIRLAVSKPAENINQQMYMVYDTNKLALLEHLIGQLEVQSMILFTSRKMNVGPI
ERALRKKGLNVRGITSDRTQEEREQVLREFKNKQFQILVATDVMSRGIDVSELSHVVNFD
LPRDAEDYVHRIGRTARAGTSGMAITFVSDHDQDAVVKIEKLIERELEKKPTPEEIGPSP
EFDPKKYRGRGPAHAGKPGGRGGKLAPRTGRPERAAAPVATAPAPAALAAPAAEGAATTP
ETEEQKRRKSRRRKPRPQGPAEGSAPAASETGAPRAEAADEGTPATDAAKRRRKRGGRNR
RGPKPEGAPQSVAAPAASE
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgggctataccaagccctcccccattcaggagcaggccattccggccgcattggctggc
aaagacctgattgcttgcgcccaaaccggcaccggcaaaaccgccgcctacctgctgccc
gtgctcgactttattgcctacgagcggcccgagcacaccacggcgcttattttgtgcccc
acgcgcgagctggccaagcaaatcgacgagcaggtggaaggctttggctaccatgtgggc
gccagcagcattgccatttacggcggcggcaaaagcgacatttgggagcagcaaaagcgt
gccctcacgcagggcgccgatatcatcattgccacgcccggccgcctgattgcgcacatg
cagctgggctacgtgaagctcgaccagatcgacttcctgatcctcgacgaggccgacaaa
atgatggacatgggctttgccgaagacatcattcagattgtcaatcagctgcccaccaaa
cgccaaacgctgctgttttcggccaccatgccgaacaagatccgcgagttctcgaaaaag
attttgcacgaaccggaggaaatccgcctggccgtgtcgaagccggccgagaacatcaac
cagcagatgtacatggtgtacgacaccaacaagctggccttgctggagcacctcatcggt
cagctcgaagtacagagcatgatcttgtttacctcgcgcaaaatgaatgtggggcccatt
gagcgcgccctgcgcaaaaaaggcctgaacgtgcgcggcatcacctccgaccgcacccag
gaggagcgcgaacaagtgctgcgcgagttcaaaaacaagcagttccagattctggtagcc
accgacgtgatgtcgcgcggcatcgacgtgagcgagttgtcgcacgtggtgaacttcgac
ctgccgcgcgatgccgaggactacgtgcaccgcattggccgcacggcccgcgctggcact
tcgggcatggccatcacattcgtgtcggaccacgaccaggacgccgtggtgaagattgaa
aagctgattgagcgggagctggagaaaaagcccacgcccgaagaaattggcccctcgccc
gagttcgaccccaaaaaataccgcggccgtggccccgcacacgccggcaagcccggcggc
cgcggcggcaaattggccccgcgcacgggccgccccgagcgcgccgctgcgccggtagcg
actgccccggcccccgcggccctcgcggccccggctgccgagggcgcagccaccacgccc
gaaaccgaagagcagaaacgccggaaaagccgccgccgcaaaccgcgcccccaaggcccg
gccgagggtagcgcccccgccgcttccgaaaccggagcacctagggccgaggcagccgac
gaaggcacccctgccaccgacgcggccaagcgccgccgcaagcggggcggccgcaaccgc
cgtggccccaagcccgagggcgcgccgcaaagcgtagcggccccggcagccagcgaataa
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