Hymenobacter oligotrophus: D3Y59_07460
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Entry
D3Y59_07460 CDS
T05656
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y59_07460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyh03019
]
D3Y59_07460
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_07460
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3Y59_07460
Messenger RNA biogenesis [BR:
hyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3Y59_07460
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D3Y59_07460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Fe_dep_repress
TFIIE_alpha
Motif
Other DBs
NCBI-ProteinID:
AYA36907
UniProt:
A0A3B7RRY9
LinkDB
All DBs
Position
complement(1749071..1750999)
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AA seq
642 aa
AA seq
DB search
MPAPTDDILSVLRQHWGHKAFRPGQEEIIRSVLAGHDTLALLPTGGGKSVCFQVPTLAHD
GLCLVISPLIALMKDQVENLRKRGIKAEAVYAGMSHRDIDQTLDNCVYGPVKFLYVSPER
LLTEMFRARVGKMKVQLIAVDEAHCLSQWGYDFRPPYLQISALRELLPGVPVLALTATAT
EEVRRDIGQKLNFGPTGQIFQRSFQRPNLSYSVLHTEDKLQRLLQVLKGVGPGKTAVVYA
RTRKQTEQAAAWLQQNGLSAAAYHAGLAADQRTRVQQDWTNDKTRIVVATNAFGMGIDKP
DVRCVVHLDAPDSLEAYYQEAGRAGRDELYAFAVLLWAPNDAHEMRRRVALGHPPIDVVR
RVYQALANYSGTAVGGGELVAFDFDLQQFASTYRLKPIDAHNAMRVLEKAGLVQLNEAVF
SPAKVHIPLDVRDLYRFQVANERHDQLIKAILRLYGGEVFSSFQNVSEGALSQQLRWSTS
DVRKTLEYLHKAGIVQYQPRHEDPQALFTTPRHDASKLPLDAKALETARERDLQKTEAVI
QYTNGMRCRQQLLLEYFGELDSKPCRICDHCLAEKRRQQKAVVATDLREQVLAQLRTAPR
TPRELLAGFQPNQADALTALLRDLVDTGVLRYTDAGQLIATA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgcacccaccgacgacatcctttccgtactgcgccaacactggggccacaaggcg
ttccggcccgggcaggaggaaattatccgctcggtgttggctggccacgatacgctggcc
ttgctgcccactggcggcggcaagagcgtttgctttcaggtgcctacgctggcccacgat
gggctttgcctggtcatttcgccgctcatcgcgctgatgaaggaccaagtagagaacctg
cgcaagcgcggcatcaaggccgaggcggtgtatgccggcatgagccaccgcgacatcgac
cagacgctcgacaactgcgtgtacgggccggttaagttcctgtacgtatcgcccgaacgg
ttgctcaccgagatgttccgggcgcgggtgggcaagatgaaggtgcagctgattgccgtc
gacgaggcgcactgcctctcgcaatggggctacgattttcgaccgccgtacctgcaaatc
agtgccttgcgcgagctgctgccgggcgtgccggtgctggcccttacggccacagccacc
gaggaagtgcgccgcgacatcgggcaaaaactcaacttcggcccaacggggcaaatcttc
caacgcagctttcagcggcccaacctttcgtactcggtgctccacaccgaagacaaattg
cagcgcctgctgcaagtactgaagggtgtaggaccgggcaaaacggccgtggtgtacgcc
cgcacgcgcaagcaaaccgaacaagcggccgcgtggctgcagcaaaacgggctaagcgcc
gcggcctaccacgccggcttggcagccgatcagcgcacgcgcgtgcagcaggactggacc
aacgacaaaacccggattgtggtggcaaccaacgctttcgggatgggcattgataagccc
gatgtgcgctgcgtggtgcacctcgacgcgcccgattcgctggaggcgtactaccaggag
gccgggcgggcgggccgcgacgagctctacgcttttgccgtgctgctgtgggcccccaac
gacgcgcacgagatgcgccgccgcgtggccctaggtcatccgcccattgatgtggtgcgg
cgcgtgtaccaggccttggccaactattccggcacggccgtgggcggcggcgagctggtc
gccttcgactttgatttgcagcagtttgccagcacctaccgcctcaagcccatcgacgcg
cacaatgccatgcgcgtgctcgaaaaagccggactggtgcagctgaacgaagccgtgttc
agcccggccaaggtacacatccccctcgatgtgcgcgatttgtaccgctttcaggtagcc
aacgaacggcacgatcagctgatcaaagccattctgcgactgtacgggggcgaagtgttc
agctcgttccagaacgtttcggagggcgccctctcacagcagttgcgctggagcacctcc
gatgtgcgcaaaaccctggagtacctgcacaaagcgggcatcgtgcagtaccaaccgcgg
cacgaggacccgcaggcgctgtttaccactccgcgccacgatgcatcgaaactaccgctc
gacgccaaggccctggaaaccgcacgcgagcgggacctgcagaaaaccgaagccgttatc
cagtacaccaacggcatgcgctgccgccagcaactgttgctggagtatttcggcgagctg
gacagcaagccttgccgcatctgcgaccattgcctggcggagaagcgccgccagcaaaag
gccgtggtggccaccgatttgcgcgagcaagtgctggcgcagctgcgcaccgccccacgc
acgccccgcgagttgctggccggttttcagcccaaccaggccgatgccctaaccgcgctg
ctccgcgacctagtggataccggcgtgctgcgctacaccgatgcggggcaattgatagct
actgcctaa
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