KEGG   Ignisphaera aggregans: Igag_0246Help
Entry
Igag_0246         CDS       T01307                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
iag  Ignisphaera aggregans
Pathway
iag03030  DNA replication
iag03410  Base excision repair
iag03420  Nucleotide excision repair
iag03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:iag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Igag_0246
   03410 Base excision repair
    Igag_0246
   03420 Nucleotide excision repair
    Igag_0246
   03430 Mismatch repair
    Igag_0246
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:iag03032]
    Igag_0246
   03400 DNA repair and recombination proteins [BR:iag03400]
    Igag_0246
Enzymes [BR:iag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Igag_0246
    6.5.1.6  DNA ligase (ATP or NAD+)
     Igag_0246
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Igag_0246
DNA replication proteins [BR:iag03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Igag_0246
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Igag_0246
DNA repair and recombination proteins [BR:iag03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Igag_0246
   NER (nucleotide excision repair)
    Other NER factors
     Igag_0246
   MMR (mismatch exicision repair)
    Other MMR factors
     Igag_0246
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase TPR_22 HTH_6
Motif
Other DBs
NCBI-ProteinID: ADM27095
UniProt: E0SQM1
LinkDB All DBs
Position
205671..207485
Genome map
AA seq 604 aa AA seqDB search
MEFSIVAQTLDILEKTSSKIQQAAALALLFKKTPSNVIDKVVYIIQGTLWPDWKGLPELG
IAEKGVQKAISMALGVSEAEVERVYKSLGDYGLAVERLKLGKQNKSVGLVGFIKSAKGEV
YKKLTVDEVYSQLVKIAMLQGEGSRDMKLRLLSSLLAVADPKEAKYIVRFIEGRLRLGVG
EATIMDGLASAFGAPRDLIERAYNIYPDLGAIAKLLAEKGVVELKNIKPTPGIPLRPMLA
ERASDPTEILNKAGIPALAEFKYDGERAQIHKKGDRIWIFSRRLEEITNQYPDVVEMALK
RIKAEEAIVEGEIIAIDPETGEFRPFQELMHRKRKKDIHEALKEYPVVVRLFDCLYVDGI
DMTLKILPERREMLRKIIDESEEFKLAEGMIVNNTAELETFFLKAVEAGCEGLVVKSLGR
DSVYQAGVRGWLWIKYKRDYKSEMTDTVDLVVVGAFHGRGKRAGTYGALLLAAYDPESDT
FKTVCKVGTGFTDEELAELPKKLEPYRLPHKHHRVDSDIEADVWFEPAVVMEVTGAELTL
SPLHTCCRGMVKQGVGISIRFPRFVRWRPDKSPKEITTTKEILEMYYRQLRKVSQTTTGV
GEER
NT seq 1815 nt NT seq  +upstreamnt  +downstreamnt
atggaattttcaattgtggcacaaactctagatatattagagaaaactagtagcaagata
caacaggcagcagctttagcactattattcaaaaagactccttctaatgttatagataaa
gttgtctacatcatccaaggaactctatggcctgattggaaagggcttccagagcttggc
atagctgagaaaggggtgcagaaagcaatatctatggctctaggggtgagtgaagctgag
gttgaaagggtgtacaagagtttaggagactatggactagctgttgagagattaaaacta
ggtaagcagaataagtctgtaggtctagtaggatttattaaatcggctaagggagaggta
tacaaaaaactgactgttgatgaagtatatagccagttggtcaagatagcaatgcttcaa
ggcgagggtagcagagatatgaagttaaggttactttcttctcttctagctgttgctgat
ccaaaagaagctaaatatatcgttcgatttattgaaggaaggttgagactaggtgttgga
gaagcaacgataatggatggattagcatcagcgtttggtgcgcctagggatctcattgag
agagcatataatatatatcctgatctaggtgcaatagcaaagcttctagcagaaaagggt
gttgtagagctaaagaatattaaacctacgccaggcattccattgagaccaatgttggca
gaacgagctagtgatccaacagagatattgaataaggctggaataccagctttagcagag
ttcaaatatgatggtgaacgagcacaaatacataagaaaggcgatagaatatggattttc
tctaggagattagaagaaataacgaatcaatatccagatgttgtagagatggcgctaaag
agaataaaggctgaagaggctattgtcgaaggcgaaattatagctatagatccagaaaca
ggggaatttagaccttttcaagagttgatgcatagaaagaggaagaaggatatacatgaa
gctttaaaggagtatcctgttgttgtaaggctatttgattgtctatatgtagatggtatt
gatatgacgcttaagattcttccagagaggagggagatgcttaggaagataattgatgaa
tcagaggaattcaaattggcagagggtatgatagttaataatacagcagagttagaaaca
ttcttcttaaaggctgtagaagcgggttgcgagggcctggttgtaaaatcgcttggaaga
gattctgtatatcaggctggggttagaggatggctatggataaagtataagagagattac
aagagtgagatgacagatactgttgatttggttgttgtaggggcattccacggtagggga
aaaagagcaggtacatatggagcactattgttagcagcatatgatcctgaaagtgataca
tttaaaaccgtctgtaaagtgggaacaggttttacagatgaagaactcgctgaacttcca
aagaaactagaaccatatagactaccccataagcatcatagggttgatagcgatatagaa
gctgatgtatggtttgagcctgcagtagttatggaggttactggtgcagaactaacacta
tcccctctacacacatgttgtagagggatggtaaaacaaggtgtaggtatatcaataaga
tttccaagatttgtgagatggagaccagataagtcacctaaagagataactacaactaag
gaaatactagagatgtattataggcaactcagaaaagtttcacagactacaacaggggtg
ggagaagagagataa

DBGET integrated database retrieval system