Ignavibacterium album: IALB_0906
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Entry
IALB_0906 CDS
T01943
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ial
Ignavibacterium album
Pathway
ial03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ial00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IALB_0906 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ial03021
]
IALB_0906 (rpoC)
03400 DNA repair and recombination proteins [BR:
ial03400
]
IALB_0906 (rpoC)
Enzymes [BR:
ial01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IALB_0906 (rpoC)
Transcription machinery [BR:
ial03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IALB_0906 (rpoC)
DNA repair and recombination proteins [BR:
ial03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IALB_0906 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AFH48618
UniProt:
I0AI11
LinkDB
All DBs
Position
1011164..1015414
Genome browser
AA seq
1416 aa
AA seq
DB search
MAFRIQENAMKDINSITISLASPDDILGRSYGEVTKPETINYRTFRPEKDGLFCEKIFGP
TRDWECYCGKYKRIRYKGIICDRCGVEVTQKSVRRERMGHIALAVPIVHIWFFRTQPSKI
GNIIGLSLKELEKVIYYESYLVLNPGPTGLNRLDLISEEQYYEVLNSLPDGNEKLDDEDP
KKFVARIGGDAVREILRKTNIEQLSTELREQLKTETSQQKKQDLLKRLRVIEAFKEEEGK
VPNRPEWMVLSYIPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPE
VILRNEKRMLQEAVDALFDNSRRGSAVRSDSNRPLKSLSDMLKGKQGRFRQNLLGKRVDY
SGRSVIVVGPELKLHQCGLPKDMAVELFKPFIIRKLIERGHNKTVKSARKVVDRKDPIIW
EILAKIIEGHPVLLNRAPTLHRLGIQAFQPVLIDERAIQLHPMVCTAFNADFDGDQMAVH
VPLSYEAQLEAMLLMLSSHNILSPQNGSPIVIPTQDIVLGCYYLTKMKEGDLGEGMTFSS
PEEVLIAYDNKVVGLHAKIKVRIDSQMVETTVGRIIFNQIVPKEMGFINQLLVKKAFSSI
IGKMFMKLGNKVTAKFLDDLKDLGFRYATAGGISVSFIDMVVPEEKDTLIAQANKKVEAI
LNEHEMGVITDAERYNKIIDVWTHTTNNVARALMEKIRHHNQGFNSLHMMVDSGARGSQE
QVRQLAGMRGLMMKPQKSLTGQAGEIIENPIVANFKEGLSVLEYFISTHGARKGLADTAL
KTADAGYLTRRLVDVSQDVIITEEDCGTILGIEVKALKDVEEEREPLAERITGRVVQQDV
YDPRTDELIIEAGNMVTEEIAERIEDANIDSVYIRTVLTCESKRGVCAKCYGRNLTTGKM
VEIGEAVGIIAAQSIGEPGTQLTLRTFHLGGTSSRIASQSQVETNTDGIVKYDRIQYVEK
IEKDPFGGPDIKVKVVTGRRGVIEILDENNRQLKKYDVPYGAELLVNDGQPVKKRQPLYN
HDPYNSLIITDVAGVVKFVDLIDGVTLQQVTDEQTGHVQKVVLESKDKNLTPSILIKADN
GEVKSFNLPVRSYLSVEEGESVSAGTTLAKISKQTAKSRDITGGLPRVTELFEARSPHEP
AIVSEIEGIVKFGARKKGAREIIVQAVDGSDEKRYSVPLQRHILVQDGDEIPAGEKITDG
PVNPHDILAIKGTSAVQEYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVKVVSPGDTK
FLEEDLVDRVEFIQENNRISNMVHIEDKGDSKFKNGQLISKSKYRETNADLKKKGKKEII
ARDAEPATFEHILLGITQAALSTESFLSAASFQETTKVLANAAIEAKTDHLLGLKENIVM
GHLIPAGTGLKKYRNIILKSDEAEPKESEIKETQSN
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atggcatttagaattcaagaaaatgcaatgaaagatataaacagtattactattagctta
gcaagtccggatgatattctcggacgctcttatggtgaagtaacaaaaccagaaaccata
aattacagaactttcagaccggaaaaagatggtctgttctgtgagaagatttttggtccc
acaagagattgggaatgctactgtggtaaatacaaaagaataagatataaaggaattatc
tgcgacagatgtggtgttgaagttactcagaaaagtgtgcgcagagaaagaatgggacac
atcgctcttgcggttccaattgtgcatatctggtttttcagaactcaaccttctaaaatc
ggaaacatcattggtttaagtcttaaagaattagagaaagtaatttattacgaatcttat
cttgtattaaatccaggaccaaccggattgaatcgtttagatttaatttctgaagaacag
tattacgaagttcttaattcgttacctgacggaaatgaaaaacttgatgatgaagatcct
aaaaaatttgttgcaagaattggtggtgatgccgttagagaaatcttacgtaagactaat
attgaacagctttcaactgaattaagagaacaattaaaaactgaaacatctcagcaaaag
aaacaagaccttctgaaaagacttcgtgtaattgaagcctttaaagaagaagaaggtaaa
gttccaaacagacctgaatggatggtattaagctacatacctgttattccaccagaactc
agaccattggttccattggaaggtggaagatttgcaaccagtgatttgaatgatctttac
agaagagtaatcattcgtaataacagattaaagagactcattgatattaaagctcctgaa
gtgatccttcgcaatgaaaagcgaatgctgcaggaagctgttgatgctttgtttgataat
tcaagacgcggaagtgccgtaagaagcgatagcaacagacctctgaaatctttaagcgat
atgcttaaaggaaaacaaggaagattcagacagaatcttctgggaaagagagttgattat
tccggtcgttcagtaattgttgttggtccggaattgaaattacatcaatgcggtcttcca
aaagatatggctgttgaattgttcaaaccattcattataagaaaacttattgaacgcgga
cataataagacagtgaagagcgccagaaaggttgttgatagaaaagatccgattatctgg
gaaattcttgccaaaattattgaaggtcatccggtattgttaaacagagctccaacactg
cacagattgggtattcaggcatttcaaccggtattgattgatgaacgtgcaattcagctt
catccgatggtttgtactgcatttaacgcggactttgatggtgatcagatggctgtgcat
gtgcctttgtcctatgaagctcaacttgaagctatgttgttgatgcttagcagtcacaac
attctttccccgcaaaatggtagtcctattgtaattccaactcaggatatagtacttggt
tgttactatcttacaaagatgaaagaaggtgatctgggcgaaggtatgacattttcttca
cctgaagaagttttgattgcttatgataataaggttgttggacttcatgcgaaaattaaa
gtcagaattgacagtcaaatggttgaaacaactgttggtagaataattttcaatcagatt
gttccaaaagaaatgggcttcattaaccagttgcttgtaaagaaagcatttagcagtatt
atcggtaaaatgtttatgaagctcggcaataaagttacggctaagttccttgatgatttg
aaagacttgggtttcagatatgcaactgcagggggaatttcagtaagcttcatcgacatg
gttgtaccggaagagaaggatactctaattgctcaggcaaacaaaaaagtagaagcaata
ttgaacgaacatgaaatgggtgttattactgatgctgaaagatataacaaaatcatagat
gtttggacacatacaacaaacaatgttgcacgagcattgatggaaaaaatccgccatcac
aatcagggattcaattcattacatatgatggttgactcaggtgctagaggttctcaggag
caggtcagacagttagcaggaatgagaggattgatgatgaaacctcagaaatctctaacc
ggtcaggcaggagaaattatcgaaaacccgattgttgctaacttcaaagaaggtctttca
gttcttgaatactttatttcaacacacggtgcaagaaaaggacttgcagatactgcgtta
aaaactgctgatgccggttatcttacaagaagattagtcgatgtttctcaggatgttata
atcactgaagaagattgtggaaccattttaggaattgaagttaaagcactaaaagatgtt
gaagaagaacgtgaacctcttgctgaaagaattacgggaagagtagttcagcaggatgtt
tatgatccgagaactgatgagctcattatcgaagccggcaatatggttacagaagaaatt
gccgaaagaattgaagatgcaaatattgactctgtttacatcagaacagttcttacttgc
gaatcaaagcgaggtgtttgcgctaaatgttatggcagaaatttaacaacaggtaaaatg
gttgagattggtgaagctgtaggaattattgcagctcaatcaattggtgaacctggcacg
cagcttacacttagaacattccaccttggcggtacttcttcccgtatcgcttctcaaagt
caggttgaaacaaatacagatggtatagttaaatatgatagaattcaatatgtagaaaaa
attgaaaaggatcctttcggaggtcccgatattaaagtaaaagttgtaaccggacggcga
ggtgtaattgagattttggatgaaaacaacagacaactcaagaaatacgatgttccttac
ggtgcagaactacttgtgaatgacggacaaccggtaaagaaacgtcaacctctctataat
cacgatccttataactctttgattattactgatgttgccggagttgtaaaatttgttgat
ctgattgatggggtaactttacaacaagttactgacgaacaaacagggcatgttcagaaa
gttgtgctagaatcaaaagacaagaatcttacaccaagcattttgattaaagcagataat
ggagaagttaaatccttcaacttgccggttcgttcatatcttagtgttgaagaaggagaa
tcagtttctgcgggaacgactctagcaaaaatatcaaaacaaacagctaagagtagagat
attacaggtggtttacctcgtgttactgaattgttcgaagccagaagtcctcacgaacca
gctattgtttctgagattgaaggaatagtaaaatttggtgcaaggaaaaaaggagccaga
gagattattgttcaggcagttgacggttcagatgagaagagatatagtgttcccttacaa
agacatattcttgttcaggatggtgatgaaatacctgctggagaaaaaataacagatgga
ccagttaatcctcacgatattcttgctatcaaaggaacaagtgcagttcaggaatatctg
gtaaatgaaatacaggatgtttacagactgcaaggtgttaagattaacgataaacatatc
gaagtaattgttcgacagatgctgcaaaaagtaaaagttgtttctcccggtgatactaaa
ttccttgaagaagatttagttgatcgtgttgaatttatacaggaaaataatcgaatctca
aatatggttcacatcgaagataagggtgattctaaattcaagaatggtcaactaatttct
aagagtaaatacagagaaacaaatgctgatttgaagaagaaaggcaaaaaagaaataatt
gcccgtgatgccgaaccagcaacatttgaacatatattattgggaataacgcaggcagca
ctttcaaccgaaagcttcctgtcagctgcatcattccaggaaacaactaaagttctcgcc
aatgcagcaattgaagctaaaacagatcacttgcttggattgaaagaaaacattgttatg
ggtcatctcattccggctggtactggattgaaaaagtacagaaatattatcctcaaatcg
gatgaggctgaacctaaggaatctgagataaaggaaactcagagtaattaa
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integrated database retrieval system
