KEGG   Ignicoccus hospitalis: Igni_0942Help
Entry
Igni_0942         CDS       T00587                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
iho  Ignicoccus hospitalis
Pathway
iho03030  DNA replication
iho03410  Base excision repair
iho03420  Nucleotide excision repair
iho03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:iho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Igni_0942
   03410 Base excision repair
    Igni_0942
   03420 Nucleotide excision repair
    Igni_0942
   03430 Mismatch repair
    Igni_0942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:iho03032]
    Igni_0942
   03400 DNA repair and recombination proteins [BR:iho03400]
    Igni_0942
Enzymes [BR:iho01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Igni_0942
    6.5.1.6  DNA ligase (ATP or NAD+)
     Igni_0942
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Igni_0942
DNA replication proteins [BR:iho03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Igni_0942
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Igni_0942
DNA repair and recombination proteins [BR:iho03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Igni_0942
   NER (nucleotide excision repair)
    Other NER factors
     Igni_0942
   MMR (mismatch excision repair)
    Other MMR factors
     Igni_0942
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ABU82122
UniProt: A8AB20
LinkDB All DBs
Position
834973..836757
Genome map
AA seq 594 aa AA seqDB search
MKFSDVVDALERLERTTSRTQIVAILTNLFKKVIEENKDIIDKVVYFIQGKLWPDWYGYP
EIGIGEKGIIKAISLAANVKEKEVEGLYKQLGDLGLVAERLMAKAPKGGLMMFVKKKEEL
TFEKVYETLKRIAFMQGEGSRDLKIKTLAGLLKEASPKEAKYIVRFVQGKLRLGVGDASI
IEALAHVAGTTKDVVERAYNLRADLGAVAKIAVTEGPEALKRVRPKPGVPVRPMLAERLN
DPKEILKKLGGKGLAEYKYDGERAQIHLLPDGKVVIFSRRLENITRSYPDVVQYAKSGLK
AKEAIVEGEIIAVNPETGEPRPFQELMRRRRKHDVALAMSEIPVNVKLFDIIYVDGEDMT
NKPLPLRRKRLEEVVEESEEFSLSTAKLVSTPEELEQFFHQSISEGHEGLVVKAVHDKSV
YQAGARGWLWIKYKKDYKSEMVEPVDLVVVGAFYGRGRRGGTFGALLVAGYDEKRDAFAT
VCKVGSGFSDEELARLPELLKPYISETKPPRVISNVKPDVWVRPALVAEIIGAEITLSPI
HTCAKDEVSAGSGLAIRFPRFIRWRPDKGPEDATTCGEIVEMYKSRLKKVEEPT
NT seq 1785 nt NT seq  +upstreamnt  +downstreamnt
ttgaagttttcggacgtcgtagacgccctcgagaggctggagaggactacctcgaggaca
cagatagtcgctatattaacgaacttatttaagaaagtcattgaagagaacaaagatata
atagataaggtggtttacttcatccaaggcaagctctggcccgactggtacggctacccg
gagatagggatcggcgagaaggggataataaaggccatctccttggccgctaacgttaag
gagaaggaagtggaaggcttgtataagcagctgggggacttgggcttagtcgccgaaagg
ttgatggcgaaggccccaaaggggggcctgatgatgtttgtaaagaagaaggaagagttg
acgttcgagaaggtatacgagactttgaagaggatagccttcatgcaaggggaggggagc
cgggacctcaagataaagacgttggcgggcctgctcaaggaggcctcgcccaaggaggcg
aagtacatcgttaggttcgtccaagggaagttgcgcttgggcgtgggtgacgcttccata
atagaggctttggcccacgtggcgggaacgaccaaggacgtcgtcgaaagggcctacaac
ttgagggcggacctgggagcggtggctaagatagcggtcaccgagggccccgaagcgctg
aagagggtaaggccgaagcccggcgtcccggtccgcccaatgttggcggagaggctcaac
gaccctaaggagatattgaagaagctcggtggcaaggggctggccgagtacaagtacgac
ggtgagagggctcagatccacttgctcccggacggaaaggtggtgatattctcgaggagg
ttggagaacataactaggtcctatccggacgtcgtccagtacgccaagtccggcttgaag
gcaaaggaggcaatagtagagggagagataattgcggtcaaccccgagaccggggagcca
aggccattccaagagttgatgaggcggaggaggaagcacgacgtagccctggcgatgagt
gagataccggtcaacgtgaagttgtttgacattatatacgtggacggcgaggacatgact
aacaagcccctccccctcaggaggaagaggttggaagaagtagttgaggagagcgaggag
ttctccctttccacggcaaagttagtaagtacgcccgaggagctcgagcagttcttccac
cagtccatttccgagggacacgagggcttggtggtgaaggccgtccacgacaagagcgtc
taccaagctggggccagagggtggctctggataaagtacaagaaagactacaagagcgaa
atggtagagccggtcgacttggtagttgtaggggccttctacggcaggggtaggagggga
ggcaccttcggggccttgttagtcgccggctacgacgagaagagggacgcctttgcgacg
gtctgcaaggtaggctcggggttcagcgacgaggagctggcgaggctcccggagctcttg
aagccgtacataagcgagaccaagcctcctagggtcataagcaacgttaagcccgacgtg
tgggtgaggccggcgctggtggcggagatcatcggggcggaaataacgctgagtcctatt
cacacttgcgctaaggacgaggtcagcgcggggagcgggctggcgatacgcttcccgcgt
ttcatacgctggaggcccgacaaggggccggaggacgccaccacgtgtggagagatagtg
gagatgtacaaaagcaggctcaagaaggtcgaggaacctacgtga

DBGET integrated database retrieval system