KEGG   Ignicoccus islandicus: EYM_07425Help
Entry
EYM_07425         CDS       T04205                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
iis  Ignicoccus islandicus
Pathway
iis03030  DNA replication
iis03410  Base excision repair
iis03420  Nucleotide excision repair
iis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:iis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EYM_07425
   03410 Base excision repair
    EYM_07425
   03420 Nucleotide excision repair
    EYM_07425
   03430 Mismatch repair
    EYM_07425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:iis03032]
    EYM_07425
   03400 DNA repair and recombination proteins [BR:iis03400]
    EYM_07425
Enzymes [BR:iis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EYM_07425
    6.5.1.6  DNA ligase (ATP or NAD+)
     EYM_07425
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     EYM_07425
DNA replication proteins [BR:iis03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    EYM_07425
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     EYM_07425
DNA repair and recombination proteins [BR:iis03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     EYM_07425
   NER (nucleotide excision repair)
    Other NER factors
     EYM_07425
   MMR (mismatch excision repair)
    Other MMR factors
     EYM_07425
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ALU12040
UniProt: A0A0U3F7M6
LinkDB All DBs
Position
1297094..1298881
Genome map
AA seq 595 aa AA seqDB search
MKFKYIVETFEKIEVTSSRIQIVATLSALFKKVIEENKEIIDKVVYFVQGRLWPDWYGYP
EIGIGEKGIIKAIALAANVREREVEELLKSLGDLGLVAERLIAKKSSRPSGLLSFTQTQS
KDLTFEEVYETLKRIAFLQGEGSRDLKIKKLAGLLKRASPKEAKYIVRFVEGKLRLGVGD
ASIIEAIASILGVPKEIVERAYNLRADLGNIAKIAFTQGPEALKAIRPQPGIPVRPMLAE
RLHDPVEILKKVGGKGLAEYKYDGERAQIHLTKEGKVIIYSRRLENITHSYPDVVKYAKE
NLKAEEAIVEGEIVAVDPNTGELRPFQELMHRRRKHDVHIAMKEYPVHVRLFDAILVNGE
DLTNKPLLERRERLISILNQTDEFRLATGEIVDTVEELERLFHQAIADGCEGLVVKAIHK
GSIYQAGARGWLWIKYKRDYKSEMIEPVDLVVVGAFYGRGRRGGTFGALLMAGYDEDKDA
FMTVCKVGSGFTDEDLAELPDLLKEYIIPNKHPRVVSEIKPDVWIQPALVAEIIGAEITL
SPIHTCAIDKVEKGTGLAIRFPRFIKWRPDKGPQDATTCKELLEMYKRQLRRTVE
NT seq 1788 nt NT seq  +upstreamnt  +downstreamnt
atgaaatttaagtacattgtagagacattcgaaaagatagaagtgacctcatcgagaatc
caaatagttgccacgctgagcgcattattcaagaaggtaatagaggaaaataaggaaata
atagataaggtagtatacttcgtacaaggacgtttatggccagattggtatggatatcct
gagattggtattggagagaaaggaataataaaagcaatagcactagctgctaacgttaga
gaaagagaagtagaggagcttctaaagagtctaggtgatcttggattagttgccgagagg
cttatcgccaagaaatcgtctagaccatccggcttactaagtttcactcaaacccagagc
aaggatctaaccttcgaagaagtttacgaaacgttaaagagaatagcattcttacaaggt
gaagggagtagagatttaaagataaagaagctagccggcttattgaaaagggcttcaccg
aaggaagctaagtatattgtgagattcgttgaaggtaaactaagattgggggttggtgat
gcatcgattattgaggcaatagcatctatcttaggtgttccaaaggagattgtggaaaga
gcctacaatctccgagctgacttaggtaacatagccaaaatagccttcactcaaggtccc
gaggcacttaaggcgataagacctcaacctggcattccagttagacccatgcttgcagaa
cgccttcacgatccggtagagatattaaagaaggtgggtggaaaaggtcttgctgaatat
aaatatgatggtgaaagggctcagatccacttaactaaagaaggaaaagtaataatatat
tctagaagattagaaaatataactcattcgtatccagacgttgtcaagtacgctaaagaa
aatctaaaagcggaagaagcaattgtagaaggagaaatagttgcagttgatccaaatacg
ggtgaattaaggccgtttcaagagctaatgcataggagaaggaaacacgatgttcacata
gcgatgaaggaatatcccgttcacgttaggcttttcgatgcaatattagtgaatggtgaa
gacttgacgaacaaacccctccttgaaaggagggagaggcttatttcaatattgaaccaa
actgatgagttcaggttagctacaggggaaatcgttgataccgttgaagagcttgaaagg
ttattccatcaagcaattgcagacggttgtgagggattagtagttaaagcgatacacaaa
gggagcatctaccaagctggagctcggggatggctctggataaagtacaagagggattac
aagagcgaaatgatagagccagtagacttagtagtagtaggtgcattttacggaagaggt
aggagaggtggaacctttggtgctctactaatggcgggttacgatgaggataaggatgca
ttcatgactgtgtgtaaagttgggagtggatttaccgacgaggacttagcggaattgcca
gatctattaaaagagtatataatacctaataagcatccccgcgtggtctcggaaataaaa
cccgatgtatggattcaacctgcactagttgcggaaataataggcgctgaaataactcta
agtcctattcatacgtgcgcaatcgataaggtcgagaagggaacggggttagcgataagg
tttcccaggttcattaagtggagacccgataaaggtcctcaagatgcaactacttgtaag
gagcttctagagatgtataaaagacaattacggagaactgttgagtag

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