Idiomarina loihiensis GSL 199: K734_01225
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Entry
K734_01225 CDS
T02681
Name
(GenBank) formamidopyrimidine DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ili
Idiomarina loihiensis GSL 199
Pathway
ili03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ili00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K734_01225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ili03400
]
K734_01225
Enzymes [BR:
ili01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
K734_01225
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K734_01225
DNA repair and recombination proteins [BR:
ili03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K734_01225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-C2H2_12
Motif
Other DBs
NCBI-ProteinID:
AGM35112
LinkDB
All DBs
Position
259787..260599
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AA seq
270 aa
AA seq
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MPELPEVEVSRLGISPHIEGRTIKSVKVHDKRLRWPVPETVHKVEGHVLRSVSRRSKYLL
LQTDNGCLILHLGMSGKLRVVPAETTHYKHDHIDIEFDNGQTLRLNDPRRFGALLYSESD
VSGHELLSQLGPEPLTDAFNIDYLFERSRGRSQSVKTFLMDNKVVVGVGNIYANEALFKA
GINPKRAAGKISKVRYQKLVPIIKETLASAIELGGTTLKDFTQVDGNPGYFAQKLQVYGR
GGKLCMVCSNRLKEVRLGQRSTVYCTQCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttacccgaagttgaagtcagccgtttaggcatttctccacacattgaaggc
cgcacaattaagtcggttaaggttcacgataagcgcctgcgctggccagtccctgaaact
gtgcacaaggttgaagggcatgttttgcgttcggttagccgccgttcaaaatatttgttg
ttgcagacagataatggctgtctgatattgcatttgggtatgtcgggtaagctgcgtgtg
gttccagccgaaacgactcactacaaacatgaccatattgatattgagttcgataacggg
caaaccctgcgtttaaatgatccgcggcgttttggtgctttgctatatagtgagagtgat
gtaagcgggcatgaactgctaagccagcttggcccggaaccgttaaccgacgcgtttaat
atcgactatttatttgagcgctcacgcgggcgttcgcagtcggtgaaaacctttcttatg
gataataaagtggtcgtgggtgttggcaatatttacgcgaacgaagccttgtttaaggcg
ggtatcaacccgaaacgggcggccgggaaaatcagtaaagtgcgctaccagaaactggtg
ccgataataaaagaaactctggcaagtgctattgaactgggtggtactaccttaaaagat
tttactcaggtggacggtaacccgggctatttcgctcagaaacttcaggtttacgggcgt
ggcggtaagctttgcatggtgtgcagtaaccggttgaaagaagttcgtctgggtcagcgc
agcaccgtgtactgcacccagtgccagcgctag
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