Ipomoea nil (Japanese morning glory): 109161792
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Entry
109161792 CDS
T04663
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109161792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109161792
Enzymes [BR:
ini01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109161792
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109161792
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109161792
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
109161792
NCBI-ProteinID:
XP_019165846
LinkDB
All DBs
Position
Un
AA seq
602 aa
AA seq
DB search
MLTVLRVHLPSDIPIVGCELTPYVLLRLPDKSVATDDVPESAPINGHFLRYKWYRIQSDR
KIAICSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFANSWQHHRVLHEHAANAVNENG
NEEEEVFGRYNSTGSGVVNTSLPPSQSAGNLANGATPLYPAAVTQRSGETWFEVGRSKTY
TPTSDDIGHVLKFECVVLEAETNIPVGHVNTILTSRVIPAPSPTPRRLISVREDDGPVIS
DLGGRISSSGTFTVLSYNILSDSYATSELYSYCPSWALSWTYRRQNLLREIVGYRADIVC
LQEVQSDHFEEFFAPELDKHGYQALFKRKTSEVFGGNMNSIDGCATFFRRDRFSHVKKYE
VEFNKAAQSLTDALVPSAQKKTALGRLIKDNVALIVVLEAKFGNQGVDNPGKRQLVCVAN
THVNVQHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSMPGSAPHALLAMGKVDP
MHPDLVVDPLGILRPTTKLTHQLPLVSAYTSFARMETGLGSERHKRRMDPITEEPLFTNC
TRDFIGTHDYIFYSADSLTVVSLLELLDEDSLRKDTALPSPEWSSDHIAMLAEFRCKSKT
KH
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgctgactgtgctgcgagtgcatcttccgtcagacattcccatagtaggctgcgagctc
acaccttatgttcttttgcgcctccctgataagtctgtcgccactgacgatgtccccgag
tccgcccccatcaatggccacttcttgagatacaagtggtatcgcattcaaagtgacagg
aaaattgccatctgtagtgtccatccatccgagcaagctacattacagtgccttggatgt
gttaaggctaaaatcccagttgctaagagttaccattgctctcctaagtgttttgcaaat
tcatggcagcatcaccgtgttttgcatgaacatgctgccaatgctgtcaatgaaaatgga
aatgaggaggaagaagtatttgggcgctataatagcacaggaagtggtgtagttaataca
agcttgcctccatcacaatcagctggcaacttagccaatggagcaacaccattataccct
gcagcagtcacacagaggagtggtgaaacttggtttgaagttggacggtctaaaacatat
acaccaaccagtgatgatattggtcatgtccttaaatttgaatgtgttgttttagaggca
gaaaccaatattccagttggccatgtgaatactatactgacatctcgtgtgattccggct
ccatctcctactccacgtcgcttgatttcagtcagagaagatgatggtcctgtaatttct
gatttaggtggccgcatttcgtcttccggaacgtttactgtgctctcatacaacatctta
tctgattcctatgcgacaagtgaattatacagttattgtccctcctgggccctttcttgg
acatatcgtaggcagaacctattgcgtgaaatagttggctatcgtgctgacattgtttgt
cttcaagaggttcaaagtgatcattttgaagagttctttgctcctgagctggacaagcat
ggctatcaagctcttttcaaaagaaaaacttctgaggtatttggtggaaatatgaatagt
attgatggttgtgctacatttttccggcgagatagattttcacatgttaagaaatatgag
gttgagtttaacaaagctgcacagtcgttgactgatgctctagttcccagtgctcaaaag
aaaaccgctctaggtcgtttgatcaaggataatgttgcactcattgtggttctcgaggca
aagttcggtaaccagggagttgataaccctgggaagcgtcagcttgtttgtgtggcaaat
actcatgtgaatgttcaacatgaattgaaggatgtcaagctttggcaggttcatacactc
ttgaaagggctggaaaagattgctgctagtgctgatattccaatgttggtgtgtggtgat
tttaattcgatgcctggaagtgctcctcatgcactcctcgcaatgggcaaagttgatcca
atgcatccagatttagtagttgaccctcttggtattctgcgtccaacaaccaagttaaca
catcaactgccgctggtaagtgcttacacttcctttgctagaatggagactggtcttggg
agtgagcgccacaagaggaggatggatcctattaccgaggagcccctatttacaaattgt
actagggacttcattggtactcatgattatatattctactcagcggactcgttaaccgtt
gtatcattgttggagctcctagacgaggatagcttgagaaaggacacagcacttccttct
ccagagtggtcttctgatcatatagccatgttagctgagtttcgctgcaaatcaaaaact
aaacattga
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